Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G07
         (581 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC035971-1|AAH35971.1|  414|Homo sapiens HERV-H LTR-associating ...    31   3.0  
AL592295-3|CAH70272.1|  177|Homo sapiens novel protein protein.        31   3.0  
AK127987-1|BAC87218.1|  630|Homo sapiens protein ( Homo sapiens ...    31   3.0  
AF126162-1|AAD48396.1|  414|Homo sapiens HERV-H LTR associating ...    31   3.0  
AY358153-1|AAQ88520.1|  262|Homo sapiens AWKS9372 protein.             30   5.2  
AK172838-1|BAD18803.1|  218|Homo sapiens protein ( Homo sapiens ...    30   5.2  

>BC035971-1|AAH35971.1|  414|Homo sapiens HERV-H LTR-associating 2
           protein.
          Length = 414

 Score = 31.1 bits (67), Expect = 3.0
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 61  QVDISTDTLDLKISGWGQYICNISN 135
           Q D S + +DL +S  G+Y+CNIS+
Sbjct: 297 QSDFSMNLMDLNLSDSGEYLCNISS 321


>AL592295-3|CAH70272.1|  177|Homo sapiens novel protein protein.
          Length = 177

 Score = 31.1 bits (67), Expect = 3.0
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -3

Query: 363 SSGNLWKELGVFSLLWQDNLKVVPGSTTINSFTVSNCGKVEEWFRSN 223
           S  N W   G F   WQ  LK+ P   T+ S T +    + +W + N
Sbjct: 56  SKANPW---GSFMGTWQMPLKIPPARVTLTSRTTAGAASLTKWIQKN 99


>AK127987-1|BAC87218.1|  630|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46103 fis, clone TESTI2023903, weakly  similar
           to Homo sapiens ubiquilin 1 (UBQLN1). ).
          Length = 630

 Score = 31.1 bits (67), Expect = 3.0
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -3

Query: 363 SSGNLWKELGVFSLLWQDNLKVVPGSTTINSFTVSNCGKVEEWFRSN 223
           S  N W   G F   WQ  LK+ P   T+ S T +    + +W + N
Sbjct: 56  SKANPW---GSFMGTWQMPLKIPPARVTLTSRTTAGAASLTKWIQKN 99


>AF126162-1|AAD48396.1|  414|Homo sapiens HERV-H LTR associating
           protein 2 protein.
          Length = 414

 Score = 31.1 bits (67), Expect = 3.0
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 61  QVDISTDTLDLKISGWGQYICNISN 135
           Q D S + +DL +S  G+Y+CNIS+
Sbjct: 297 QSDFSMNLMDLNLSDSGEYLCNISS 321


>AY358153-1|AAQ88520.1|  262|Homo sapiens AWKS9372 protein.
          Length = 262

 Score = 30.3 bits (65), Expect = 5.2
 Identities = 21/77 (27%), Positives = 37/77 (48%)
 Frame = +2

Query: 101 LVGDNTFATSVTFMASVTRSFNVTSKGCLINRNSEATPYTPLLLNHSSTLPQFETVNEFI 280
           L   N   +S   ++S++ + N  S  C + R+   +    ++LN   T P   + N+F 
Sbjct: 76  LKSGNKINSSSVCVSSISENDNGISFTCRLGRDQSVS--VSVVLN--VTFPPLLSGNDFQ 131

Query: 281 VVEPGTTFKLSCHNREN 331
            VE G+  KL C+ + N
Sbjct: 132 TVEEGSNVKLVCNVKAN 148


>AK172838-1|BAD18803.1|  218|Homo sapiens protein ( Homo sapiens
           cDNA FLJ23999 fis, clone KAIA0799. ).
          Length = 218

 Score = 30.3 bits (65), Expect = 5.2
 Identities = 21/77 (27%), Positives = 37/77 (48%)
 Frame = +2

Query: 101 LVGDNTFATSVTFMASVTRSFNVTSKGCLINRNSEATPYTPLLLNHSSTLPQFETVNEFI 280
           L   N   +S   ++S++ + N  S  C + R+   +    ++LN   T P   + N+F 
Sbjct: 76  LKSGNKINSSSVCVSSISENDNGISFTCRLGRDQSVS--VSVVLN--VTFPPLLSGNDFQ 131

Query: 281 VVEPGTTFKLSCHNREN 331
            VE G+  KL C+ + N
Sbjct: 132 TVEEGSNVKLVCNVKAN 148


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,368,025
Number of Sequences: 237096
Number of extensions: 1991260
Number of successful extensions: 6627
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6621
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6042162242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)