Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G05
         (101 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    26   0.76 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    24   3.1  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    23   7.1  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    22   9.4  

>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 6   SYYFPFAQRPDNYNLHSVENYEAIRFLD 89
           SYY PF    DN  ++ V+ YEA +  +
Sbjct: 23  SYYGPFYDDGDNTGVNVVDLYEAFKVFE 50


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 9    YYFPFAQRPDNYNLHSVENYEAIRFLD 89
            Y+     R  +Y+ H +E Y   +FLD
Sbjct: 1684 YWIDVQLRFGDYDSHDIERYTRAKFLD 1710


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 27  QRPDNYNLHSVENYEA 74
           QR DN N H  E YE+
Sbjct: 493 QREDNSNFHEPELYES 508


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 2   DFILFPIRSKAGQLQST 52
           D +LF I SKA +L ST
Sbjct: 748 DSVLFDITSKAARLAST 764


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 381,711
Number of Sequences: 5004
Number of extensions: 3163
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 2,362,478
effective HSP length: 15
effective length of database: 2,287,418
effective search space used: 41173524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)