Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G05
         (101 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0081 - 12716130-12716271,12716367-12716449,12716729-127167...    28   1.2  
06_01_0469 + 3322886-3323564,3324033-3324953,3325025-3325155,332...    28   1.2  
03_02_0786 - 11169820-11170158,11170245-11170433,11171173-111714...    25   6.2  
11_01_0760 + 6385866-6385955,6386629-6386682,6386863-6387012,638...    25   8.3  
11_01_0753 + 6333019-6333108,6333427-6333603,6333783-6333836,633...    25   8.3  

>10_07_0081 -
           12716130-12716271,12716367-12716449,12716729-12716785,
           12716886-12716942,12717014-12717113,12717204-12717274,
           12718284-12718460,12719142-12719312,12722151-12722234,
           12722310-12722354,12722447-12722537,12722745-12722863,
           12723213-12723434,12723630-12723854,12725366-12725571,
           12726081-12726258,12726702-12726762,12727930-12728039,
           12728126-12728257,12729136-12729208,12729608-12729645,
           12730373-12730474,12730565-12730622,12731071-12731172,
           12731240-12731386,12732023-12732159,12732256-12732405,
           12733103-12733259,12733615-12733673,12733982-12734138,
           12734209-12734354,12739177-12739320,12739478-12739606
          Length = 1309

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 18  PFAQRPDNYNLHSVENYEAIRF 83
           PFA+ P  Y++H +E Y  ++F
Sbjct: 103 PFAKLPHLYDMHMMEQYRGVQF 124


>06_01_0469 +
           3322886-3323564,3324033-3324953,3325025-3325155,
           3325237-3325317,3328173-3328820
          Length = 819

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 81  TVLLRSSLRCVDCSCPAFERMG 16
           TVLL +S   + C C  FERMG
Sbjct: 388 TVLLDTSTMEISCGCRKFERMG 409


>03_02_0786 -
           11169820-11170158,11170245-11170433,11171173-11171469,
           11171568-11171630,11171884-11171997,11173011-11173091,
           11173176-11173307,11174265-11174363,11174453-11174530,
           11174641-11174901
          Length = 550

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 27  QRPDNYNLHSVENYEAIRFLD 89
           +RP+  +LHS+EN +AI   D
Sbjct: 203 ERPEVSDLHSIENAKAIHAFD 223


>11_01_0760 +
           6385866-6385955,6386629-6386682,6386863-6387012,
           6387120-6387461
          Length = 211

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 54  CVDCSCPAFERMGNS 10
           C+D  CP F+R G S
Sbjct: 56  CLDMRCPGFQRTGGS 70


>11_01_0753 +
           6333019-6333108,6333427-6333603,6333783-6333836,
           6334015-6334164,6334271-6334612
          Length = 270

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 54  CVDCSCPAFERMGNS 10
           C+D  CP F+R G S
Sbjct: 115 CLDMRCPGFQRTGGS 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,320,718
Number of Sequences: 37544
Number of extensions: 17860
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 14,793,348
effective HSP length: 15
effective length of database: 14,230,188
effective search space used: 256143384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)