Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_G04
(451 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 116 2e-27
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 61 9e-11
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 61 9e-11
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 41 1e-04
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 28 0.58
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2... 25 4.1
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 25 7.1
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 24 9.4
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 24 9.4
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 24 9.4
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 116 bits (278), Expect = 2e-27
Identities = 50/57 (87%), Positives = 56/57 (98%)
Frame = +1
Query: 1 GNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 171
GNST+IQE+F+R+ +QF+AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 369 GNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 60.9 bits (141), Expect = 9e-11
Identities = 23/55 (41%), Positives = 39/55 (70%)
Frame = +1
Query: 4 NSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 168
N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 384 NTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 438
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 60.9 bits (141), Expect = 9e-11
Identities = 23/55 (41%), Positives = 39/55 (70%)
Frame = +1
Query: 4 NSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 168
N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 380 NTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 40.7 bits (91), Expect = 1e-04
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Frame = +1
Query: 4 NSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN---DLVSEYQ 165
N T+I LFKR +Q+ + +R AFL Y E + E + E +S+ + DL++EY+
Sbjct: 380 NHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 28.3 bits (60), Expect = 0.58
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 4 NSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 111
NS+ IQ L K I+ T +R ++ Y+G G+DE
Sbjct: 193 NSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228
>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 4.1
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +2
Query: 284 LFRVTLRIPVTILSNFITRLAKF---YPPG 364
LF + +P T++++FI RLA+ PPG
Sbjct: 331 LFLSSTHLPATLIASFIKRLARLALTAPPG 360
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 24.6 bits (51), Expect = 7.1
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +2
Query: 317 ILSNFITRLAKF--YPPGFDLQVEFLRYMVLQSTFLRFRVPHNEQD 448
I +F+ RLA+ + +Q FL Y+V+ + F +PH +D
Sbjct: 100 IPKSFLERLAESDDFEAVKSIQEFFLDYLVVNNDLASFNIPHIIED 145
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 24.2 bits (50), Expect = 9.4
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 34 RISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 159
++ E+F+ +F RK L WY G+ E + N+N SE
Sbjct: 1714 KLLERFSLIFLRKCALLWYCRYGVS----FETQPNLNFQNSE 1751
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 24.2 bits (50), Expect = 9.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 430 HAESKKCTLQYHIP*EFNLKVKSGGVK 350
HA+ KKC L + FN + +S G K
Sbjct: 901 HADRKKCLLPESLEGTFNNQDESNGTK 927
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 24.2 bits (50), Expect = 9.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 298 CYSKK*RFIMAWTILG 251
C+ KK R I+ W ILG
Sbjct: 6 CFLKKYRLILLWCILG 21
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,369,881
Number of Sequences: 5004
Number of extensions: 20312
Number of successful extensions: 62
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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