Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G02
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    26   4.0  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    26   5.2  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    25   9.1  

>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
 Frame = +3

Query: 405 PNNISISTTATHVRFDFFHK-------LVIVET*KPFEIDQNCRVYWPFPNFRQTIWMIT 563
           PN +S+ T  TH R    HK        +  +  +P EI  +    +P P F++T  ++T
Sbjct: 37  PNLLSVDTRPTH-RKGHHHKHSLSHQYFLPPKNRQPLEIPAS----YPIPTFKETFAILT 91

Query: 564 FTKKQNLELS 593
           F +K  L  S
Sbjct: 92  FPQKLKLTSS 101


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -3

Query: 458 EKIKTYVRGGGGYTY 414
           EK +++VR GGG+TY
Sbjct: 523 EKFQSFVRVGGGFTY 537


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 375 DXSIMINIFVPNNISISTTATHVRFDFFHKLV 470
           D S  +   VP+ +S+ T    +R D F KL+
Sbjct: 267 DGSTFLKSLVPSLLSLDTEGRVLRLDSFSKLI 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,538,097
Number of Sequences: 5004
Number of extensions: 51737
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)