Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G02
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0268 - 6994095-6994555,6996873-6996982,6997237-6998612           31   0.58 
11_04_0469 - 18064430-18064494,18064621-18064747,18064823-180651...    27   9.4  

>03_02_0268 - 6994095-6994555,6996873-6996982,6997237-6998612
          Length = 648

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 513 DNFGQFQKASRFLQ*LIYGKNQNVRAWRWWIYLYYLV 403
           ++FGQ  K SR     IY  +  VR W W +Y   LV
Sbjct: 482 EDFGQLNKHSRLGGAAIYSGSPAVRRWHWLVYTPTLV 518


>11_04_0469 -
           18064430-18064494,18064621-18064747,18064823-18065120,
           18065230-18065380,18067718-18067944,18068033-18068367,
           18068452-18068485,18069445-18069500
          Length = 430

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
 Frame = -3

Query: 575 LFCKCNHPNCLTE--VWKRP 522
           + C+C+HPN L    VWK P
Sbjct: 78  ILCQCDHPNVLKPIGVWKNP 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,188,859
Number of Sequences: 37544
Number of extensions: 266834
Number of successful extensions: 456
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)