Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F24
         (111 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    23   7.0  
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    22   9.3  

>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 61  HRKRITSRQKMSTQCLW 111
           + K++  +QK  T+CLW
Sbjct: 237 YEKKLGLKQKALTKCLW 253


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/29 (24%), Positives = 18/29 (62%)
 Frame = +3

Query: 24  AGLIALVQSSVVSPKTYHFKTKDVDAVFV 110
           A  + L+ ++++  +TYH+++     +FV
Sbjct: 168 AACMVLISTAIMISRTYHYRSLPGTWIFV 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 440,439
Number of Sequences: 5004
Number of extensions: 4219
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 18
effective length of database: 2,272,406
effective search space used: 40903308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)