Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F24
         (111 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0270 - 20271859-20272866,20273043-20273058,20273455-202737...    26   5.0  
02_01_0438 + 3179627-3180280,3180933-3181156,3182339-3182495           25   8.7  

>01_05_0270 -
           20271859-20272866,20273043-20273058,20273455-20273756,
           20273932-20274231
          Length = 541

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 2   YEDCPSSSGAHCPRAIQCGVTENVSLQ 82
           Y    SSS AH PRA   G+  N +LQ
Sbjct: 27  YSQVSSSSAAHAPRAGLDGLDLNFNLQ 53


>02_01_0438 + 3179627-3180280,3180933-3181156,3182339-3182495
          Length = 344

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 17  SSSGAHCPRAIQCGVTENVSLQDKRC 94
           ++SGA CP A  C +  ++ LQ + C
Sbjct: 142 AASGADCPLAAVCDLNVHLPLQAEVC 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,966,782
Number of Sequences: 37544
Number of extensions: 30028
Number of successful extensions: 91
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 14,793,348
effective HSP length: 17
effective length of database: 14,155,100
effective search space used: 268946900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)