Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F24
         (111 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33033| Best HMM Match : G-patch (HMM E-Value=0.71)                  26   5.5  
SB_21308| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.3  

>SB_33033| Best HMM Match : G-patch (HMM E-Value=0.71)
          Length = 696

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 21  LAGLIALVQSSVVSPKTYHFKTKD 92
           L G+I+L Q   ++P  Y+F+ KD
Sbjct: 352 LEGMISLPQEIEIAPMNYNFERKD 375


>SB_21308| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2641

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 18  VLAGLIALVQSSVVSPKTYHFKTKDVD 98
           + A  IA ++  VVSP    F +KD D
Sbjct: 552 IKARTIARIKKQVVSPAAVQFSSKDTD 578


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,518,743
Number of Sequences: 59808
Number of extensions: 36623
Number of successful extensions: 111
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 16,821,457
effective HSP length: 17
effective length of database: 15,804,721
effective search space used: 300289699
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)