Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F24
         (111 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     20   2.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    19   7.4  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    18   9.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    18   9.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    18   9.8  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    18   9.8  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/18 (38%), Positives = 8/18 (44%)
 Frame = +1

Query: 49  PVWCHRKRITSRQKMSTQ 102
           P WC R  +    KM  Q
Sbjct: 338 PAWCDRVLLNPTDKMLVQ 355


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -2

Query: 50  GLHEGNEP 27
           GLH  NEP
Sbjct: 164 GLHRANEP 171


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = +1

Query: 25  RGSLPSCNP 51
           RG+ P C+P
Sbjct: 77  RGACPQCSP 85


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 5/12 (41%), Positives = 8/12 (66%)
 Frame = -2

Query: 101 CVDIFCLEVIRF 66
           CV +F   +I+F
Sbjct: 503 CVGVFTFNIIKF 514


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 5/12 (41%), Positives = 8/12 (66%)
 Frame = -2

Query: 101 CVDIFCLEVIRF 66
           CV +F   +I+F
Sbjct: 556 CVGVFTFNIIKF 567


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = +1

Query: 25  RGSLPSCNP 51
           RG+ P C+P
Sbjct: 77  RGACPQCSP 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,837
Number of Sequences: 438
Number of extensions: 261
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 17
effective length of database: 138,897
effective search space used:  2639043
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)