Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F22
         (452 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    32   0.036
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   4.1  
SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|c...    25   7.2  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    25   7.2  
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    24   9.5  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    24   9.5  
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        24   9.5  

>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 32.3 bits (70), Expect = 0.036
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -3

Query: 450 VKCHIEC-YNYCSLAHHFLTIRVRRVCISRLET 355
           V+C +E  Y  C+LA  F+T R+R+  + RLET
Sbjct: 889 VECALETIYQVCALADDFMTSRIRQDLLPRLET 921


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +3

Query: 3   ETYSFKDNPDTYNPKYNTEYGMYEPNCGLENLM 101
           ++Y+ ++    Y  +++T  GMY    G  N+M
Sbjct: 23  QSYNTQEEQPAYPQRFSTSQGMYAAEYGNANMM 55


>SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 146

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +2

Query: 167 KRSLQX*IRFHSFYP 211
           K+SLQ  +RFHS++P
Sbjct: 31  KKSLQFIMRFHSYHP 45


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = +3

Query: 18  KDNPDTYNPKYNTEYGMYEPNCGLENLMVSWGHDEYLYRVLVHNKSKF 161
           K N    N KYN +       C L+N   S   DEY+Y  LV N  +F
Sbjct: 108 KKNDTKCNWKYNPDLDY----CYLDN---STSPDEYVYVSLVQNPERF 148


>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +3

Query: 264 IKKAVLEFNQYDLYTKSAAIPD-IEALWPYYESLIEKYI 377
           +KK +  F  YD Y   +  PD +  L  Y E  I  Y+
Sbjct: 118 VKKILANFKDYDFYIGESMDPDAMVVLMNYREDGITPYM 156


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 265 ISSSPFF*KVFVITTSVP 212
           +SSSPF+    VI TSVP
Sbjct: 289 VSSSPFYSNSSVIPTSVP 306


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 136 FWCTTNQSSPKKVFTXLDKISFVLPVARWW 225
           F CT   + PK  F  L  +S  +PV   W
Sbjct: 12  FCCTLAYAVPKSQFLQLHSLSNAIPVEWKW 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,802,203
Number of Sequences: 5004
Number of extensions: 36604
Number of successful extensions: 91
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)