Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F22
         (452 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0471 + 21130839-21130869,21131013-21131127,21132228-211323...   105   2e-23
08_01_0269 - 2172363-2172538,2172632-2172697,2172790-2172887,217...    31   0.33 
02_05_1231 - 35104832-35105002,35105104-35105167,35105267-351055...    31   0.57 
11_01_0788 + 6599962-6602700                                           29   1.3  
12_02_0023 - 12404617-12405285                                         29   2.3  
08_02_1082 + 24225592-24226422                                         27   5.3  
06_01_0878 + 6735266-6735340,6735946-6736041,6738610-6738720,673...    27   7.1  
02_01_0503 + 3669758-3670059,3670351-3670870                           27   7.1  

>06_03_0471 +
           21130839-21130869,21131013-21131127,21132228-21132309,
           21132444-21132648,21133237-21133296,21133420-21133472,
           21133589-21133711,21133844-21133913,21134012-21134090,
           21134172-21134253,21134272-21134310
          Length = 312

 Score =  105 bits (252), Expect = 2e-23
 Identities = 54/123 (43%), Positives = 74/123 (60%), Gaps = 2/123 (1%)
 Frame = +3

Query: 15  FKDNPDTYNPKYNTEYGMYEPNCGLENLMVSWGHDEYLYRVLVHNKSKFPKKGLYKXR*D 194
           FK+NPD  NPK NT++G Y   CGL+N+++SWGHD+Y+Y V   NK+  P  GL+  R  
Sbjct: 184 FKENPDYLNPKLNTKFGAYSEGCGLDNVLMSWGHDDYMYLVAKENKTTLPSAGLFIIRYH 243

Query: 195 --FIRSTRGTLVVITNTF*KKGDEEIKKAVLEFNQYDLYTKSAAIPDIEALWPYYESLIE 368
             +     G  + + N      D+E  K +  FN+YDLY+KS    D+E + PYY SLIE
Sbjct: 244 SFYPLHKHGAYMHLMN----DEDKENLKWLRVFNKYDLYSKSNERIDVEKVKPYYMSLIE 299

Query: 369 KYI 377
           K I
Sbjct: 300 KRI 302


>08_01_0269 -
           2172363-2172538,2172632-2172697,2172790-2172887,
           2173442-2173791
          Length = 229

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +1

Query: 115 TTSTYTGFWCTTNQSSPKKVFTXLDKISFVLP 210
           +T+TYTGF CT ++ + +K F  L  + +VLP
Sbjct: 129 STTTYTGFQCTVDEETSEK-FKGLPGVLWVLP 159


>02_05_1231 -
           35104832-35105002,35105104-35105167,35105267-35105557,
           35105755-35105999,35106410-35106489,35106890-35107006,
           35107150-35108002,35108081-35108161
          Length = 633

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = -3

Query: 414 LAHHFLTIRVRRVCISRLETRSKAR---ELLCPGSRRSLCTSRIG*TREQL 271
           + H+    R+RR+  SRL   ++ R   E+ C G++ SLC  ++  TR ++
Sbjct: 279 IPHYIGDRRIRRLFASRLRKAARNRICGEMSCKGNKLSLCEKKMPTTRRRV 329


>11_01_0788 + 6599962-6602700
          Length = 912

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -2

Query: 157 FDLLCTKTLYR--YSSCPQDTIKFS 89
           FDL C KT Y   +S CPQD  K +
Sbjct: 340 FDLFCKKTFYNSMHSKCPQDLEKLA 364


>12_02_0023 - 12404617-12405285
          Length = 222

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +1

Query: 103 YLGDTTSTYTGFWCTTNQSSPKKVFTXLDKISFVLPV 213
           +LG  +S+ +G W T + + P      +  +S+V+P+
Sbjct: 32  WLGTRSSSQSGAWVTGHTARPVSSHASIPSLSYVIPI 68


>08_02_1082 + 24225592-24226422
          Length = 276

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 279 LEFNQYDLYTKSAAIPDIEALWP 347
           L+F+ Y   TKS A PD+   WP
Sbjct: 225 LDFSDYPSITKSLADPDLHFEWP 247


>06_01_0878 +
           6735266-6735340,6735946-6736041,6738610-6738720,
           6738816-6739309,6739422-6739587,6739666-6739789,
           6739874-6739986,6740085-6740693,6743095-6743385,
           6743845-6743913,6744099-6744188,6744281-6744696,
           6744882-6744969
          Length = 913

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 230 YEHLLKEGRRGDQESCSRV*PIRLVHKERR 319
           Y+  +K GR+G Q S S+  P+R  H   R
Sbjct: 110 YKQTVKRGRKGSQISPSKTYPLRSSHSNVR 139


>02_01_0503 + 3669758-3670059,3670351-3670870
          Length = 273

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 217 RWW*LRTPSKRRATRRSRKL 276
           RWW   +PS+R A RR R L
Sbjct: 126 RWWQQVSPSRRAADRRGRHL 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,310,777
Number of Sequences: 37544
Number of extensions: 222843
Number of successful extensions: 530
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)