Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_F21
(252 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82267-4|CAB05192.1| 285|Caenorhabditis elegans Hypothetical pr... 27 2.3
U28944-17|ABB88239.1| 222|Caenorhabditis elegans Hypothetical p... 26 3.1
Z77669-5|CAK12563.1| 976|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z77669-4|CAB01242.1| 988|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr... 26 4.1
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele... 26 4.1
AF125459-12|AAD12832.1| 533|Caenorhabditis elegans Hypothetical... 25 5.4
AF026215-10|AAB71320.2| 971|Caenorhabditis elegans Hypothetical... 25 7.1
Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical pr... 25 9.4
AL117204-12|CAB55127.1| 385|Caenorhabditis elegans Hypothetical... 25 9.4
>Z82267-4|CAB05192.1| 285|Caenorhabditis elegans Hypothetical
protein F38C2.6 protein.
Length = 285
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 4 WTSRKCNR*WTLFRRKKS 57
WT+R C WTLF R S
Sbjct: 128 WTTRLCKAGWTLFSRPDS 145
>U28944-17|ABB88239.1| 222|Caenorhabditis elegans Hypothetical
protein C18A3.11 protein.
Length = 222
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 4 WTSRKCNR*WTLFRRKKSPVM 66
WT KC WT+F R+ S V+
Sbjct: 145 WTFDKCVGDWTMFHRENSDVV 165
>Z77669-5|CAK12563.1| 976|Caenorhabditis elegans Hypothetical
protein T07F10.1b protein.
Length = 976
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 31 WTLFRRKKSPVMYRP*TYSGSKVPNVETII 120
W L ++S ++Y P YSGS+ V +I
Sbjct: 353 WGLITYRESALLYDPRIYSGSQKRRVAVVI 382
>Z77669-4|CAB01242.1| 988|Caenorhabditis elegans Hypothetical
protein T07F10.1a protein.
Length = 988
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 31 WTLFRRKKSPVMYRP*TYSGSKVPNVETII 120
W L ++S ++Y P YSGS+ V +I
Sbjct: 365 WGLITYRESALLYDPRIYSGSQKRRVAVVI 394
>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical protein
R107.8 protein.
Length = 1429
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 208 VTVDLMSLPGIVCRLRRLYAAYLWQPP 128
V + L +LPG R RR+ A +W PP
Sbjct: 922 VVLMLGALPGNRTRKRRMINASVWMPP 948
>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.elegans
homeotic lin-12 protein gene, complete cds. ).
Length = 1429
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 208 VTVDLMSLPGIVCRLRRLYAAYLWQPP 128
V + L +LPG R RR+ A +W PP
Sbjct: 922 VVLMLGALPGNRTRKRRMINASVWMPP 948
>AF125459-12|AAD12832.1| 533|Caenorhabditis elegans Hypothetical
protein Y25C1A.4 protein.
Length = 533
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +1
Query: 85 SGSKVPNVETIIIVSVVATDTPRTNASTGRRYPVNSSDPPSQISKTYLGRST 240
S + VP+ T+ +V +T + T AST +++ + T G ST
Sbjct: 30 STTTVPSTSTVTTTTVASTSSGSTTASTAAGGSTSTTAAGGSTASTAAGGST 81
>AF026215-10|AAB71320.2| 971|Caenorhabditis elegans Hypothetical
protein F09G2.1 protein.
Length = 971
Score = 25.0 bits (52), Expect = 7.1
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -2
Query: 203 GGSDEFTGYRLPVEAFVRGVSVATTETIIIVST-FGTFDPEYVYGRYITGLFFLLN 39
GGS + Y + ++ + T T+ ST T DPEY+ IT LF + N
Sbjct: 261 GGSQQC--YDVTLDVCATPTTAEPTTTVTSTSTPKPTLDPEYLNDWQITYLFAITN 314
>Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical protein
C09F9.2 protein.
Length = 1642
Score = 24.6 bits (51), Expect = 9.4
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 81 ILWIKGTECGNYYYSFGGCHRYAAYKRL-NRQTIPGKLIRSTVT 209
++W KG + NY ++ GG AA + N GK R +T
Sbjct: 1041 VIWAKGADPMNYVHTTGGAPIKAAPEFFENAMKYHGKNARGVMT 1084
>AL117204-12|CAB55127.1| 385|Caenorhabditis elegans Hypothetical
protein Y116A8C.21 protein.
Length = 385
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +1
Query: 4 WTSRKCNR*WTLFRRKKS 57
WT+R C W LF R S
Sbjct: 127 WTTRLCKNGWMLFSRPDS 144
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,021,733
Number of Sequences: 27780
Number of extensions: 110131
Number of successful extensions: 336
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 219801160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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