Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F20
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.06 |vps25||ESCRT II complex subunit Vps25|Schizosaccharo...   103   2e-23
SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |S...    28   0.84 
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    27   1.5  
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    26   4.5  
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           25   6.0  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   7.9  
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy...    25   7.9  

>SPBC4B4.06 |vps25||ESCRT II complex subunit
           Vps25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score =  103 bits (246), Expect = 2e-23
 Identities = 56/134 (41%), Positives = 76/134 (56%), Gaps = 3/134 (2%)
 Frame = +3

Query: 102 PWQYNFPPFFTIQVHTETKAKQLEAWQHLITDYLKATKQSTIDIR-EAQNSPLFNNTVIN 278
           P  YNFPPFFT Q++  T   Q  AWQ  I  + +  +Q++I I  E   S L +N+ I+
Sbjct: 4   PSIYNFPPFFTRQLNDNTWHSQKAAWQMWILLWCRENRQTSITINPELLESSLLHNSTIH 63

Query: 279 RKLSQESVFTILEDMVKCGRAAPIDKS--KNVWEIYWHSLDEWGNMIYSWASENGMTNSV 452
           R L       I+EDMVK   A   +K   K+V+ +YW S+ EWGNMI  W S+ G   S+
Sbjct: 64  RTLPLSVFREIVEDMVKQNLAEWTEKRNPKDVFWVYWRSISEWGNMILKWLSDMGREGSI 123

Query: 453 CTLFELREGEDTVD 494
           CT +EL+E    VD
Sbjct: 124 CTFYELQEQYKEVD 137


>SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 445

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 72  VTTVYIIYSILAKLRYLHYSQLI 4
           VTT++I++ IL  L+YLH   +I
Sbjct: 256 VTTLFIMFQILQGLKYLHEQNII 278


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 396 EWGNMIYSWASENGMTNSVCTLFELREGEDT 488
           +W N I+ W ++ G  N+  T + + +G DT
Sbjct: 201 DWANKIWDWTTDVGFVNT--TTYAVYDGADT 229


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 70  YITILWQIYRGLGSIIFPLFLQFKCTQKQRRNN*KH 177
           ++ I+W++  GLG +I  + L F+   K  +   KH
Sbjct: 247 HLRIVWRLSIGLGLVIPCVLLPFRIAMKDPKTYVKH 282


>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 429 QKPNYISYYPTHPT-SANIFPIHFYSYLWAQLCHISPYPLE 310
           +K + + YY THPT + + FPI  ++Y+ A   + +  P E
Sbjct: 332 KKESLLKYYATHPTITPDGFPI--FAYVRALYAYKATLPSE 370


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +2

Query: 20  CKYLSFARIEYMI*TVVTLQYYGRYIVALAV*FSPFFYNSSAHRNKGETIRSMATSHNRL 199
           C  ++  RI Y +  VVT Q        +         N+S+H++ G T+ S     N +
Sbjct: 499 CCIMTIIRINYFVDNVVTTQTTHEEDALIGS-----SINTSSHQHYGSTLNSTPHRRNSI 553

Query: 200 FKSNK 214
             SN+
Sbjct: 554 ALSNR 558


>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 442

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 396 EWGNMIYSWASENGMTNSVCTLFE 467
           EW N+ Y W+   G      T+F+
Sbjct: 206 EWANVAYDWSQRIGFIQEDYTVFD 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,387,142
Number of Sequences: 5004
Number of extensions: 50195
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)