Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_F20
(574 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0129 - 26770543-26770720,26774592-26774719,26774829-267749... 93 1e-19
06_01_0414 + 2948868-2948998,2949136-2949202,2949442-2949531,295... 35 0.040
10_08_0825 + 20831170-20831349,20831380-20831547,20831627-208316... 29 2.0
07_03_0164 + 14616156-14616225,14616409-14616477,14617672-146179... 29 2.0
06_01_0027 - 271199-271424,271628-272095,272721-273018,273133-27... 29 3.5
08_02_1630 - 28371925-28372407,28372514-28372714,28372797-28374242 28 4.6
04_04_0559 - 26234106-26235169,26235437-26235452 28 4.6
12_01_0126 - 953586-953637,953890-954554 28 6.1
11_01_0116 - 896184-896849 28 6.1
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 28 6.1
>01_06_0129 -
26770543-26770720,26774592-26774719,26774829-26774933,
26775661-26775788,26777332-26777433,26778760-26778861,
26779777-26779852,26779971-26780059,26780177-26780230,
26780482-26780614,26780671-26780797,26781590-26781648
Length = 426
Score = 93.5 bits (222), Expect = 1e-19
Identities = 49/141 (34%), Positives = 77/141 (54%)
Frame = +3
Query: 126 FFTIQVHTETKAKQLEAWQHLITDYLKATKQSTIDIREAQNSPLFNNTVINRKLSQESVF 305
FF ET+ KQ++ W+ LI DY ++ K I + E + PLF+N I R LS E+
Sbjct: 58 FFNNSPVRETREKQVQLWKDLILDYCRSQKLYIISLEE--DFPLFSNPKIERSLSHEAKE 115
Query: 306 TILEDMVKCGRAAPIDKSKNVWEIYWHSLDEWGNMIYSWASENGMTNSVCTLFELREGED 485
L +V GRA +DK I W + +W N I ++ +NG+ +SV T+ E+R G +
Sbjct: 116 VFLAALVYEGRAEWMDKGHKKCLILWLRIQDWANYILNFVKDNGLEDSVMTVEEIRSGIE 175
Query: 486 TVDQEFHGLDMNIIIKAFKFI 548
T E G+D ++++A K +
Sbjct: 176 TRGTELAGIDRGVLMRALKLL 196
>06_01_0414 +
2948868-2948998,2949136-2949202,2949442-2949531,
2950509-2950565,2950684-2950732,2950934-2951010,
2952776-2952815,2952909-2953003,2953174-2953341,
2953634-2953721,2954275-2954341,2954571-2954646,
2954759-2954876,2954988-2955233,2955296-2955471,
2956056-2956238,2956331-2956450,2956586-2956621
Length = 627
Score = 35.1 bits (77), Expect = 0.040
Identities = 34/146 (23%), Positives = 67/146 (45%), Gaps = 13/146 (8%)
Frame = +3
Query: 153 TKAKQLEAWQHLITDYLKATKQSTIDIREAQNSPLFNNTVINRKLS----QESVFTILED 320
T+ ++ W H DY+ T +T D+ E Q P + +I+RK + + + +E+
Sbjct: 445 TQEVMIDGWFHTDDDYMPNTMYNTGDVGEWQ--PNGSLKIIDRKKNIFKLSQGEYVAVEN 502
Query: 321 MVKC-GRAAPIDKSKNVWEIYWHSLDEW--------GNMIYSWASENGMTNSVCTLFELR 473
+ G ID ++W IY +S + + ++ WA +NG++ S+ L E
Sbjct: 503 LENVYGVLQEID---SIW-IYGNSFESFLVAVINPNQQVLEHWAEQNGISGSLSELCENS 558
Query: 474 EGEDTVDQEFHGLDMNIIIKAFKFIR 551
++ + E + +K ++FIR
Sbjct: 559 RAKEYILSELTKIAKEKKLKGYEFIR 584
>10_08_0825 +
20831170-20831349,20831380-20831547,20831627-20831698,
20831997-20832075,20832182-20832375,20832469-20832558,
20832851-20832940,20833196-20833282,20833477-20833560,
20833690-20833809,20834096-20834103,20834443-20834575,
20835044-20835125,20835330-20835496,20836006-20836493,
20836551-20836638,20836716-20836818,20836932-20837083,
20837191-20837316,20837459-20837529,20837691-20837753,
20838418-20838490,20838972-20839040,20839180-20839257,
20839434-20839484,20839586-20839696
Length = 1008
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2
Query: 510 GRGILDQLCLRLLVIQTKCKRNWSYHFQKPNYISYYPTHPTSANIFP 370
G+ + D RL V +K ++ S + KP ISY P+ P S ++ P
Sbjct: 736 GKSLPDHQSFRLRVALSKITQD-SDQWIKPQSISYSPSSPVSMDVMP 781
>07_03_0164 +
14616156-14616225,14616409-14616477,14617672-14617902,
14618394-14618557,14618795-14618935,14619632-14619691,
14620358-14620522,14620676-14620732,14621084-14621148,
14622235-14622358,14622469-14622606,14622705-14622830
Length = 469
Score = 29.5 bits (63), Expect = 2.0
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = -2
Query: 435 HFQKPNYISYYPTHPTSA 382
H+Q PNY +YYP++ ++A
Sbjct: 58 HWQSPNYFAYYPSNSSTA 75
>06_01_0027 -
271199-271424,271628-272095,272721-273018,273133-273343,
273427-274124,274921-274969,276059-276112,276244-276275,
276319-276484,276563-276628,276717-276812,276868-276957,
277302-277398,277496-277575,277709-277753,278006-278134,
278593-278722,278888-279222,279918-280053,280149-280328,
280422-280679,280752-281137
Length = 1409
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -1
Query: 430 SEAQLYIILPHSSNECQYISHTFLLLSMGAAL--PHFTISSRIVKTDSCDNFLF 275
SE Q S NEC ++ + LL+ G L + +SSR+ D+C+ F++
Sbjct: 618 SEQQQLFQKGFSLNEC-FVQYKEALLAYGMLLCRKKYQVSSRVSIRDTCEQFMY 670
>08_02_1630 - 28371925-28372407,28372514-28372714,28372797-28374242
Length = 709
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Frame = -3
Query: 416 IYHITPLIQRVPIYFPYIFTLIYGRSSATFHHIL*NSKDRFL*QF--SIYNCVIKQWTIL 243
+ + T L+ P+ IFT + A FHH N + L SI + WT
Sbjct: 387 LINCTTLLSLFPLIARRIFTTTSSQQPADFHHATNNKGELHLHGLIVSIKEAAAQVWTCF 446
Query: 242 CFSYV 228
C ++
Sbjct: 447 CHHFI 451
>04_04_0559 - 26234106-26235169,26235437-26235452
Length = 359
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 58 INCSYITILWQIYRGLGSI 114
INC+YIT +W++ LGS+
Sbjct: 275 INCAYITRVWEVGLKLGSV 293
>12_01_0126 - 953586-953637,953890-954554
Length = 238
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 446 IGHTIFRSPTIYHITPLIQRVPIYFPYIFTLIYGRSS 336
+G +S I H+TPL +P+ Y+ YGR S
Sbjct: 123 VGLRASKSKAIAHVTPLSSSLPLPEAYVVEGSYGRRS 159
>11_01_0116 - 896184-896849
Length = 221
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 446 IGHTIFRSPTIYHITPLIQRVPIYFPYIFTLIYGRSS 336
+G +S I H+TPL +P+ Y+ YGR S
Sbjct: 123 VGLRASKSKAIAHVTPLSSSLPLPEAYVVEGSYGRRS 159
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 231 IREAQNSPLFNNTVINRKLSQESVFTILEDMVKCGRAAPIDKS 359
I+ QN+P TV+ ++E ILE+ VK GR++ I +
Sbjct: 212 IKRLQNNPRSGPTVLVLAPTRELATQILEEAVKFGRSSRISST 254
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,301,761
Number of Sequences: 37544
Number of extensions: 282188
Number of successful extensions: 741
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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