Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F20
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82062-1|CAB04889.2|  183|Caenorhabditis elegans Hypothetical pr...   155   2e-38
Z82073-3|CAB04926.1|  631|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z70206-1|CAA94124.1|  407|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF025451-7|AAB71204.1|  207|Caenorhabditis elegans Hypothetical ...    28   5.4  

>Z82062-1|CAB04889.2|  183|Caenorhabditis elegans Hypothetical
           protein W02A11.2 protein.
          Length = 183

 Score =  155 bits (376), Expect = 2e-38
 Identities = 69/163 (42%), Positives = 98/163 (60%)
 Frame = +3

Query: 81  TMADISWPWQYNFPPFFTIQVHTETKAKQLEAWQHLITDYLKATKQSTIDIREAQNSPLF 260
           T +   WPWQY+FPPFFTIQ    TK KQLEAW  L+ DY +  K  ++DI EA  S LF
Sbjct: 7   TASAFKWPWQYDFPPFFTIQKSLNTKDKQLEAWARLVIDYAQHNKIYSLDIAEATTSELF 66

Query: 261 NNTVINRKLSQESVFTILEDMVKCGRAAPIDKSKNVWEIYWHSLDEWGNMIYSWASENGM 440
           NN  +NR+LS + V T+L+ + +       D  +  + I+W   D W NMIY WA EN  
Sbjct: 67  NNQKLNRRLSTDGVNTVLQYLEQKKLIEFTDNGRTRFHIFWRRPDVWANMIYQWAVENAF 126

Query: 441 TNSVCTLFELREGEDTVDQEFHGLDMNIIIKAFKFIRTERQVR 569
            N+  TL+E+  G+DT ++ FH L+  I++KA   +  +R+ +
Sbjct: 127 INTPLTLYEITHGDDTTNESFHNLEREILMKALTCLEEQRRAQ 169


>Z82073-3|CAB04926.1|  631|Caenorhabditis elegans Hypothetical
           protein W06D12.5 protein.
          Length = 631

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 57  YKL*LHYNTMADISWPWQYNFPPFFTIQVHTET 155
           YK   +Y   AD +W W +    FF++ V+T T
Sbjct: 298 YKGSTYYKLEADDNWKWTFESAFFFSMNVYTTT 330


>Z70206-1|CAA94124.1|  407|Caenorhabditis elegans Hypothetical
           protein C49F8.1 protein.
          Length = 407

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 371 PYIFTLIYGRSSATFHHIL*NSKDR 297
           PYIF LI+  SS   HHI+ +S+ R
Sbjct: 115 PYIFILIFHASSVREHHIMNSSQRR 139


>AF025451-7|AAB71204.1|  207|Caenorhabditis elegans Hypothetical
           protein C24H12.8 protein.
          Length = 207

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 444 WSYHFQKPNYISYYPTHPTSANIFPIHFY 358
           W+ HF    YI+++ TH    N+ P   Y
Sbjct: 124 WATHFDVNFYINFFCTHYNKMNVLPCTSY 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,011,572
Number of Sequences: 27780
Number of extensions: 274935
Number of successful extensions: 855
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)