Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_F19
(460 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 28 0.79
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 26 3.2
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ... 25 4.2
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 5.6
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 25 5.6
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 25 5.6
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 25 7.3
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 25 7.3
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom... 24 9.7
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch... 24 9.7
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 24 9.7
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 24 9.7
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 24 9.7
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom... 24 9.7
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 24 9.7
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 27.9 bits (59), Expect = 0.79
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +2
Query: 173 LSIAVAKYITISTNN*QHVITSSVLQTAWVPYLNSLG 283
LSI+ AK TI + + + S++L T+W+ +LNS+G
Sbjct: 3546 LSISSAKLSTICRSVLKASVNSALL-TSWICFLNSIG 3581
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 25.8 bits (54), Expect = 3.2
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +1
Query: 259 GSIPEFSWYSPIKTGYYPLMTSYFFPFAQRP 351
G P+ +Y P + YYP +Y P +P
Sbjct: 107 GGYPQQPYYYPNQPNYYPAQPAYAQPVYAQP 137
>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 251
Score = 25.4 bits (53), Expect = 4.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 313 LMTSYFFPFAQRPDNYNLHSVKNYEAIRFLD 405
L+ SY+ PF DN ++ V YEA + +
Sbjct: 20 LLNSYYGPFYDDGDNTGVNVVDLYEAFKVFE 50
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 5.6
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 202 NFYQQLTTRYYFERLTNGLGSIPEF 276
NFY + YF T G+ S+P F
Sbjct: 126 NFYPPIQNSTYFINATGGIDSMPYF 150
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.0 bits (52), Expect = 5.6
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = +1
Query: 133 HLPFWWSSERYGNLKHRRGEI-YYNFYQQLTTRYYFERLTNGLGSIPEFSWYSP 291
H FWWS + NL E+ NF L FE N + EFS SP
Sbjct: 118 HQKFWWSLRKKRNLPKENSELDLSNFQDDLD----FE---NSISQKNEFSQKSP 164
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 25.0 bits (52), Expect = 5.6
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Frame = -2
Query: 333 EKV*SHQGIVTSLNR-----RVPREFRYGTQAVCKTLEVITC 223
E V SH+ I+++L + RVP YG KT ++ C
Sbjct: 35 EDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILAC 76
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 24.6 bits (51), Expect = 7.3
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 58 NNEEQRLTYLTEDIGFNSYYYYFHSHL 138
+ + Q++ Y+ ++ NSY Y HSH+
Sbjct: 313 SRKTQKIHYINDNDPSNSYSSYQHSHV 339
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 24.6 bits (51), Expect = 7.3
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +1
Query: 16 QYVYYANYSNTFLYNNEEQRLT--YLTEDIGFNSYYYYFHSHLPFWWSSERY 165
Q ++ SN + N L+ Y+T D GF S Y Y S + S E +
Sbjct: 265 QNTFFNGKSNPTIDPNSSSLLSEKYITLDKGFPSKYIYSRSLFEYQLSDEDF 316
>SPBC1271.09 |||glycerophosphodiester
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 543
Score = 24.2 bits (50), Expect = 9.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 91 EDIGFNSYYYYFHSHLPFWWSSERYG 168
+DIG +Y L F W S+R+G
Sbjct: 118 QDIGMIAYVGTIVGQLSFGWYSDRFG 143
>SPBC1773.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 391
Score = 24.2 bits (50), Expect = 9.7
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 145 WWSSERYGNLKHRRGEIYYNFYQQL--TTRYYFER 243
+WS+ N K R E Y NF++ + T ++ ER
Sbjct: 282 FWSNFEIANFKFFRNEQYENFFRTMDATGGFWTER 316
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 24.2 bits (50), Expect = 9.7
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +1
Query: 118 YYFHSHLPFWWSSERY 165
Y + PFWW+S+R+
Sbjct: 1469 YQLLKNNPFWWTSQRH 1484
>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 24.2 bits (50), Expect = 9.7
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -3
Query: 446 WPFCRDCTKVF 414
+PFC+DC+ VF
Sbjct: 146 YPFCKDCSLVF 156
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 24.2 bits (50), Expect = 9.7
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 61 NEEQRLTYLTEDIGF-NSYYYYFHSHLPFWWSSE 159
N + + YLT D+ + S YYY L F +++E
Sbjct: 256 NGQNQSVYLTYDVPYGRSLYYYTSCALEFRFTNE 289
>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 184
Score = 24.2 bits (50), Expect = 9.7
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 265 IPEFS-WYSPIKTGYYPLMTSYF 330
+PEF WYS ++ + L+ S+F
Sbjct: 113 LPEFKFWYSSMRATLFALVASFF 135
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 24.2 bits (50), Expect = 9.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 238 RSNNVLLIVGRNCNIFRHG 182
R+N+ L+I G C +FR G
Sbjct: 963 RNNDFLIIYGIGCEVFRLG 981
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,926,245
Number of Sequences: 5004
Number of extensions: 38543
Number of successful extensions: 125
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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