Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_F19
(460 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916... 29 2.4
06_01_0469 + 3322886-3323564,3324033-3324953,3325025-3325155,332... 28 4.2
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375... 28 4.2
10_08_0355 - 17131178-17131268,17131376-17131429,17131521-171316... 27 5.5
04_04_0451 - 25323178-25323241,25323614-25323741,25324533-253246... 27 7.3
02_04_0622 - 24508508-24508666,24509533-24509634,24510108-245101... 27 7.3
09_02_0501 - 9955987-9956244,9956329-9956583,9956713-9956884,995... 27 9.6
07_03_1700 - 28810239-28810870,28811304-28812594 27 9.6
06_03_0791 - 24641350-24641418,24641684-24641965,24642318-246425... 27 9.6
>01_03_0256 +
14288885-14288936,14289362-14291335,14291648-14291673,
14291855-14292025,14292560-14292647,14292711-14292802,
14292920-14293384,14293860-14294633,14294890-14295087,
14296940-14297374,14297455-14297688,14298042-14298323
Length = 1596
Score = 28.7 bits (61), Expect = 2.4
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 3/116 (2%)
Frame = +1
Query: 91 EDIGFNSYYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYYFERLTNGLGSIP 270
+ I F+SY + +P WW +E N EIY + Y++RL G+
Sbjct: 281 QSIPFSSYIWR-RGTIPIWWGAE-IKNAVSVEAEIYVADDPFNGSLQYYQRLGRRYGNKS 338
Query: 271 -EFSWYSPIKTGYYPLMTSYFFPFAQ-RPDNYNLHSVK-NYEAIRFLDIFEKTFVQ 429
E + S K G P++ + +P+ + S K + E +R KT++Q
Sbjct: 339 LEVNATSQKKPGVVPIVCVNLLRYGDGKPETVLVDSFKSSLEYLRSTKKLGKTWIQ 394
>06_01_0469 +
3322886-3323564,3324033-3324953,3325025-3325155,
3325237-3325317,3328173-3328820
Length = 819
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 397 TVLLRSSLRCVDCSCPAFERMG 332
TVLL +S + C C FERMG
Sbjct: 388 TVLLDTSTMEISCGCRKFERMG 409
>02_05_0008 +
24934917-24935229,24936387-24936608,24936876-24937591,
24937646-24937728,24938448-24938514,24938833-24939228,
24939276-24939318,24939380-24939474,24940287-24940314,
24940636-24940754
Length = 693
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = +1
Query: 67 EQRLTYLTEDIGFNSYYYYFHSHLPFWWSSERYGNLKH 180
E+ + + IG Y Y + PF GNLKH
Sbjct: 281 EESIHFFMRSIGLREYSRYLCFNFPFTHEKSLLGNLKH 318
>10_08_0355 -
17131178-17131268,17131376-17131429,17131521-17131663,
17131812-17132096,17132168-17132301,17132383-17132556,
17132639-17132707,17132814-17132878,17133441-17133589,
17133747-17133989,17134119-17134255,17134340-17134561,
17134661-17134827,17136680-17136819
Length = 690
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +1
Query: 355 NYNLHSV---KNYEAIRFLDIFEKTFVQSLQK 441
NYN+ V KN+ A+R DIF KT + +K
Sbjct: 521 NYNIAIVSLKKNFNAVRLEDIFSKTVQEPSEK 552
>04_04_0451 - 25323178-25323241,25323614-25323741,25324533-25324634,
25325314-25325382,25325489-25325557,25325646-25325720,
25325805-25325909,25326394-25326492,25326626-25328344,
25328629-25328931,25329031-25329129,25329733-25329850,
25329933-25330018,25330091-25330159,25330232-25330306,
25330675-25330772,25331271-25331432,25332391-25332556,
25332902-25332970,25333064-25333126,25333221-25333376,
25334027-25334365
Length = 1410
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 242 VLQTAWVPYLNSLGTRLLRLVTI 310
+L A+VPYL L + LRLVTI
Sbjct: 1359 MLGKAFVPYLEGLNSTQLRLVTI 1381
>02_04_0622 - 24508508-24508666,24509533-24509634,24510108-24510176,
24510294-24510362,24510428-24510502,24510584-24510688,
24511309-24511407,24511521-24513230,24513489-24513788,
24514748-24514846,24514962-24515079,24515166-24515251,
24515334-24515402,24515746-24515843,24516373-24516534,
24516779-24516787,24516970-24516991,24517620-24517712,
24517872-24517940,24518720-24518782,24518882-24519037,
24520895-24521230
Length = 1355
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 242 VLQTAWVPYLNSLGTRLLRLVTI 310
+L A+VPYL L + LRLVTI
Sbjct: 1315 MLGKAFVPYLEGLNSTQLRLVTI 1337
>09_02_0501 - 9955987-9956244,9956329-9956583,9956713-9956884,
9957000-9957227,9959102-9959235,9959319-9959402,
9959539-9959829,9960076-9960405,9960526-9960668,
9960970-9961126,9961210-9961313,9961423-9961583,
9961664-9961980,9962094-9962375,9962471-9962772,
9962848-9962938,9963262-9963338,9963428-9963587,
9963682-9963766,9963838-9963949,9964864-9964943,
9968644-9968981
Length = 1386
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = +1
Query: 196 YYNFYQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYP---LMTSYFFPFAQRP 351
+Y F+ T YY +G P ++ + + TG+Y L + + P + P
Sbjct: 1250 WYLFFMYFTLSYYTFYGMMAVGLTPNYNMSTVVSTGFYTMWNLFSGFLIPLTRIP 1304
>07_03_1700 - 28810239-28810870,28811304-28812594
Length = 640
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 351 GQLQSTQRKELRSNTVLGHF*KDFRTVPTERPI 449
G+L S Q LRSN + G D T+P+ R I
Sbjct: 94 GKLDSLQVLSLRSNRLAGSLPSDVTTLPSLRSI 126
>06_03_0791 -
24641350-24641418,24641684-24641965,24642318-24642537,
24642657-24642776,24643056-24643132,24643220-24643339,
24644121-24644186,24644265-24644479,24645450-24645582,
24646562-24646708,24647301-24647596,24648222-24648319,
24648425-24648471,24649340-24649449,24649663-24649735,
24650795-24650899
Length = 725
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 37 YSNTFLYNNEEQRLTYLTEDI 99
YS + NEE RL+YL +D+
Sbjct: 465 YSTVLYHLNEEMRLSYLAQDL 485
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,605,005
Number of Sequences: 37544
Number of extensions: 211708
Number of successful extensions: 545
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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