Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F19
         (460 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14)               29   1.8  
SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)                    28   4.3  
SB_22838| Best HMM Match : Arrestin_N (HMM E-Value=1.1e-30)            27   5.6  
SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22)                    27   7.5  
SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)           27   9.9  
SB_9710| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  
SB_28966| Best HMM Match : Kinesin (HMM E-Value=0.012)                 27   9.9  

>SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14)
          Length = 869

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 173 LSIAVAKYITISTNN*QHVITS-SVLQTAWVPYLNSLGTRLLR 298
           + +A AKYI +S +  + VI + S    + +PY NS+ T +LR
Sbjct: 165 IQLAEAKYINVSLHFLEQVIVALSEKSRSHIPYRNSMMTSVLR 207


>SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)
          Length = 1650

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 304  YYPLMTSYFFPFAQRPDNYN 363
            Y PL T+ F+ +  RP NYN
Sbjct: 1560 YSPLSTAPFYDYGYRPQNYN 1579


>SB_22838| Best HMM Match : Arrestin_N (HMM E-Value=1.1e-30)
          Length = 173

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/56 (23%), Positives = 20/56 (35%)
 Frame = +1

Query: 76  LTYLTEDIGFNSYYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYYFER 243
           + Y  E + F S +  FH      W         H+  E+Y+N    L    +  R
Sbjct: 29  VVYSKESLKFRSVHVEFHGEARTNWDEMENYTTTHKNEEVYFNKKTSLLANVHLYR 84


>SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +1

Query: 112 YYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYYF 237
           YYYY++ +  +++    Y    H     YY +Y      YY+
Sbjct: 109 YYYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYY 150



 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +1

Query: 112 YYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYYF 237
           YYYY++ +  +++    Y    H     YY +Y      YY+
Sbjct: 110 YYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYY 151


>SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/52 (25%), Positives = 19/52 (36%)
 Frame = +1

Query: 88  TEDIGFNSYYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYYFER 243
           TE + F S +  FH      W         H+  E+Y+N    L    +  R
Sbjct: 48  TESLKFRSVHVEFHGEARTNWDEIENYTTTHKNEEVYFNKKTSLLANVHLYR 99


>SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22)
          Length = 1123

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/59 (22%), Positives = 26/59 (44%)
 Frame = +1

Query: 1   VKEEEQYVYYANYSNTFLYNNEEQRLTYLTEDIGFNSYYYYFHSHLPFWWSSERYGNLK 177
           ++  +Q++  A +  TF+Y+  E+       D    +  Y  H  L FW   +   N++
Sbjct: 644 IENLKQFIVQARFVETFVYDMTEKPGKCAIRDRERKTISYNDHRFLVFWTDFQNTNNMR 702


>SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)
          Length = 721

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 115 YYYFHSHLPFWWSSER 162
           +YYF   +  WW SER
Sbjct: 7   FYYFTKFIDIWWCSER 22


>SB_9710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 13  EQYVYYANYSNTFLYNNEEQRLTYLTEDI 99
           E Y YY + ++  ++NN+  R +   +DI
Sbjct: 27  EPYTYYQSNASCIIFNNDSSRSSRYNDDI 55


>SB_28966| Best HMM Match : Kinesin (HMM E-Value=0.012)
          Length = 89

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 158 RDMVTLSIAVAKYITISTNN*QHVITSSVLQTAWVPYLNSLGTRLLR 298
           + +VTL I ++     S N+ +H    +  +  +VPY +S+ T LL+
Sbjct: 29  KSLVTLGIVISTLAENSLNSYEHTKKLAYRKKLFVPYRDSVLTFLLK 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,956,672
Number of Sequences: 59808
Number of extensions: 267780
Number of successful extensions: 660
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)