Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F19
         (460 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81579-9|CAN99688.1|  225|Caenorhabditis elegans Hypothetical pr...    31   0.40 
AF047658-1|AAC04418.2|  348|Caenorhabditis elegans Hypothetical ...    27   5.0  
Z93380-3|CAB07600.1|  339|Caenorhabditis elegans Hypothetical pr...    27   6.6  

>Z81579-9|CAN99688.1|  225|Caenorhabditis elegans Hypothetical
           protein R13H4.2a protein.
          Length = 225

 Score = 31.1 bits (67), Expect = 0.40
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 85  LTEDIGFNSYYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRY 231
           L +D  ++ YYY+   +   ++ S RY    +     Y+N Y    TRY
Sbjct: 71  LYDDYWYDKYYYFSPLYRSTYYPSRRYSYSDYLPNPYYWNNYGSYWTRY 119



 Score = 26.6 bits (56), Expect = 8.7
 Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +1

Query: 13  EQYVYYAN-YSNTFLYNNEEQRLTYLTEDIGFNSYYYYFHSHLPFWWSSERYGNLKHRRG 189
           ++Y Y++  Y +T+  +       YL     +N+Y  Y+  +  +W+  + Y +   R  
Sbjct: 78  DKYYYFSPLYRSTYYPSRRYSYSDYLPNPYYWNNYGSYWTRYKGYWYDYD-YPSSYRRYT 136

Query: 190 EIYYNFYQQLTTRYYFERLTNGLGS 264
           +  +N Y   T   Y   L + L +
Sbjct: 137 DSAFNRYLNYTYTPYRSYLMDSLST 161


>AF047658-1|AAC04418.2|  348|Caenorhabditis elegans Hypothetical
           protein K03H6.2 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 133 HLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYY 234
           HLPF +    +  + H R EI+YN    + + Y+
Sbjct: 264 HLPFQYELVDHDKMYHHRTEIWYNNDMSIGSSYH 297


>Z93380-3|CAB07600.1|  339|Caenorhabditis elegans Hypothetical
           protein F28C12.4 protein.
          Length = 339

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
 Frame = +1

Query: 46  TFLYNNEEQRLTYLTEDIGFNSYYY----YFHSHLPFWWSSERYGNLKHRRGEIYYNFYQ 213
           +F+Y++E  RL +   D     Y+Y    YF ++  F  + +R   + +   + Y ++  
Sbjct: 92  SFVYSSEPCRLPFHFTDCEVELYFYYLTNYFSTYSVFSLTFDRL--ISYFFPKCYISYPY 149

Query: 214 QLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPL 315
           Q++      +L   LG+   F  Y   K GY P+
Sbjct: 150 QVSISLLIIQLVFTLGTY-YFGLYGVPKLGYVPI 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,367,905
Number of Sequences: 27780
Number of extensions: 204065
Number of successful extensions: 444
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)