Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F18
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    29   0.48 
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos...    27   2.6  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    25   5.9  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    25   7.8  

>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 157 DDNTRTRHIDFRLYFSVGALLLLFTVDIRVLVFVVGDT 44
           D+N +   ++     ++GA LL FTVD   L+ V  D+
Sbjct: 413 DENVKVETVEDSFLSNIGASLLSFTVDKNKLILVSNDS 450


>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 584

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 155 VNLVNIGFDLRKLGVSPELGLQMRDEV 235
           V+LV + F+L   GVSP L     DE+
Sbjct: 299 VDLVTLAFNLYTQGVSPNLDFSKLDEI 325


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -1

Query: 204 GETPSLRRSNPMLTRLTITPGLDISILDCISAWAHC 97
           G+ P L  SN      +I PG  ISI D      HC
Sbjct: 312 GDHPKLFASNIKFFGKSIGPGTGISIFDIQENIGHC 347


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 302 LHAYNTPEHGHFASGVTVRLPSRLLALEYTLNYPTD 409
           L+A+N P H H  +  +    SR ++   TL  P +
Sbjct: 189 LNAFNEPSHSHVPNSASSTALSRGMSNSVTLTAPPE 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,317,830
Number of Sequences: 5004
Number of extensions: 44693
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)