Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F18
         (570 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0391 + 8482996-8483216,8484146-8484194,8484559-8487465           28   6.0  
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924...    28   6.0  
09_04_0211 - 15656614-15657186                                         27   8.0  
05_05_0232 + 23492225-23492250,23492261-23492393,23492513-234927...    27   8.0  
04_04_0803 - 28165828-28166136,28166257-28166505,28166628-281668...    27   8.0  
04_04_0636 + 26804533-26805036                                         27   8.0  
02_05_0259 - 27226378-27226398,27226643-27226813,27227063-272272...    27   8.0  
01_06_0809 - 32137202-32138128,32138247-32138631,32139503-321396...    27   8.0  

>09_02_0391 + 8482996-8483216,8484146-8484194,8484559-8487465
          Length = 1058

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -1

Query: 288  SWLLTCRSRVNRGGLDVDTSSRICSPSSGETPSLRRSNPMLTRLTITPGLDISILDC 118
            SWL +C    +    ++DT   I S  S +   +  S  + T L I    D++I DC
Sbjct: 854  SWLQSCSKLTSMKIKNIDTLQEIASLPSLKELEVHNSGRLQTVLNIRRLEDLTISDC 910


>02_04_0433 -
           22891261-22891509,22892181-22892301,22892405-22892496,
           22892692-22892755,22892855-22892920,22893102-22893193,
           22893991-22894050,22894181-22894270,22894484-22894613,
           22895066-22895157,22895299-22895373,22895663-22895754,
           22896496-22896586,22897541-22897574,22897745-22897791,
           22899110-22899209,22899300-22899436,22900837-22901015,
           22901146-22901188,22901264-22901297,22901839-22901948,
           22902043-22902224,22903062-22903168,22903266-22903480
          Length = 833

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 195 PSLRRSNPMLTRLTITPGLDISIL 124
           PS R++NP   R TITPG  + +L
Sbjct: 61  PSTRKANPTKLRSTITPGTVLILL 84


>09_04_0211 - 15656614-15657186
          Length = 190

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 316 HTRTWPLCLRSYR 354
           HT +WP CLRS+R
Sbjct: 71  HTSSWPRCLRSHR 83


>05_05_0232 +
           23492225-23492250,23492261-23492393,23492513-23492734,
           23493238-23493504,23493631-23493819
          Length = 278

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +3

Query: 357 VYHLDYW--LLNTLLIIQPXMNGRNFSYIGVGVLIHPQVVITAAHIVXNYKDFPTTINVR 530
           V H+D W  +  ++L+ +  ++G    + G G L++P + + A   V +  D P   N  
Sbjct: 192 VVHVDAWAAVAPSVLVPEDVLHGVQVVHAGGGALVYPVMRLEAPPAVQHVGDVPWQHNCG 251

Query: 531 A 533
           A
Sbjct: 252 A 252


>04_04_0803 -
           28165828-28166136,28166257-28166505,28166628-28166889,
           28168116-28168204,28168286-28168342,28168443-28168595
          Length = 372

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 299 HLHAYNTPEHGHFASGVTVRLP 364
           HL AYN PE   F  GV + +P
Sbjct: 43  HLSAYNNPEEQKFVLGVILMVP 64


>04_04_0636 + 26804533-26805036
          Length = 167

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -1

Query: 318 VL*AWRWYFFSWLLTCRSRVNRGGLDVDTSSRICSPSSGE-TPSLRRSNPML 166
           +L AWRW      L CR R  RG L + T+S  C  +  E +   +R  P+L
Sbjct: 15  LLSAWRW-----ALCCRRRRRRGYLRLQTTSGGCGGACKEGSEEAKRLAPVL 61


>02_05_0259 -
           27226378-27226398,27226643-27226813,27227063-27227284,
           27227508-27227668,27227933-27227996,27228002-27228194,
           27228499-27228587,27228668-27228852,27229671-27229779,
           27229880-27229936,27230023-27230175
          Length = 474

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 299 HLHAYNTPEHGHFASGVTVRLP 364
           HL AYN PE   F  GV + +P
Sbjct: 43  HLSAYNNPEEQKFVLGVILMVP 64


>01_06_0809 -
           32137202-32138128,32138247-32138631,32139503-32139607,
           32139737-32139770,32139856-32140098,32140187-32140247
          Length = 584

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = +2

Query: 239 TSKPPRFTLDLHVNNHEKKYHLHAY-NTPEHGHFASGV 349
           T K P    D H N H    H H Y +  EH HF  G+
Sbjct: 105 TCKYPATARDKHRNRHGGCRHRHRYKHEHEHEHFFPGL 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,764,692
Number of Sequences: 37544
Number of extensions: 317111
Number of successful extensions: 728
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)