Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F18
         (570 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    35   0.047
U41535-2|AAB63402.1|  731|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U41535-1|AAK67247.1|  734|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U56963-7|AAQ01523.1|  526|Caenorhabditis elegans Amino acid tran...    27   9.5  
U40415-10|AAK39254.1|  215|Caenorhabditis elegans Dnaj domain (p...    27   9.5  
AF067948-5|AAC17698.2|  243|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +3

Query: 444 GVLIHPQVVITAAHIVXNYKDFPTTINVRAGE 539
           GVLI P +VIT+AH V +  DF  T  V  G+
Sbjct: 48  GVLIAPSIVITSAHCVFSGDDFAVTAKVTLGD 79


>U41535-2|AAB63402.1|  731|Caenorhabditis elegans Hypothetical
           protein F18A1.6a protein.
          Length = 731

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = -1

Query: 276 TCRSRVNRGGLD---VDTSSRICSPSSGETPSLRR-SNPMLTRLTITPGLDISILD 121
           T  S VN  G D    D  S + S  S ++ S     +P+ T LTI  GLD +++D
Sbjct: 60  TSISPVNLSGEDGSIADAESLMDSSGSNQSVSFEEIDDPLKTELTILDGLDANLVD 115


>U41535-1|AAK67247.1|  734|Caenorhabditis elegans Hypothetical
           protein F18A1.6b protein.
          Length = 734

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = -1

Query: 276 TCRSRVNRGGLD---VDTSSRICSPSSGETPSLRR-SNPMLTRLTITPGLDISILD 121
           T  S VN  G D    D  S + S  S ++ S     +P+ T LTI  GLD +++D
Sbjct: 63  TSISPVNLSGEDGSIADAESLMDSSGSNQSVSFEEIDDPLKTELTILDGLDANLVD 118


>U56963-7|AAQ01523.1|  526|Caenorhabditis elegans Amino acid
           transporter protein 4 protein.
          Length = 526

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 8/36 (22%), Positives = 21/36 (58%)
 Frame = +3

Query: 348 LPFVYHLDYWLLNTLLIIQPXMNGRNFSYIGVGVLI 455
           +P ++   +WL+   L++ P +     + +GVG+++
Sbjct: 405 VPLIFSFLFWLITIALVVVPFIEEFTQTIVGVGLVL 440


>U40415-10|AAK39254.1|  215|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 14 protein.
          Length = 215

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
 Frame = +2

Query: 212 GLQMRDEVSTS--KPPRFTLDLHVNNHEKKYHLHAYNTPEHGHFASGVTVRLPSRLLALE 385
           GL+  +E  TS    PR       ++H+ K  LH YN       A+   ++   R LAL 
Sbjct: 5   GLREAEEGRTSGGASPREESPAADHSHDPKKGLHLYNVLGIQKNATDDEIKKAYRKLALR 64

Query: 386 Y--TLNYPTDXERPELF 430
           Y    N   D E+ E+F
Sbjct: 65  YHPDKNLDGDPEKTEMF 81


>AF067948-5|AAC17698.2|  243|Caenorhabditis elegans Hypothetical
           protein T27C4.1 protein.
          Length = 243

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 115 FSVGALLLLFTVDIRVLVFVVGDTRF 38
           F++G+LLL F++ I     +VG TRF
Sbjct: 156 FTLGSLLLAFSLAIPTAAAMVGTTRF 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,953,932
Number of Sequences: 27780
Number of extensions: 256828
Number of successful extensions: 653
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)