Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F18
         (570 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45430.1 68415.m05651 DNA-binding protein-related contains Pf...    32   0.23 
At3g54810.2 68416.m06066 zinc finger (GATA type) family protein ...    30   0.95 
At3g54810.1 68416.m06065 zinc finger (GATA type) family protein ...    30   0.95 
At5g46350.1 68418.m05705 WRKY family transcription factor contai...    29   1.7  
At5g62240.1 68418.m07815 expressed protein various predicted pro...    28   3.8  
At1g76390.1 68414.m08877 armadillo/beta-catenin repeat family pr...    27   6.7  
At1g26580.1 68414.m03238 expressed protein similar to putative M...    27   8.8  

>At2g45430.1 68415.m05651 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 317

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 227 DEVSTSKPPRF-TLDLHVNNHEKKYHLHAYNTPEHGH 334
           D+VS S PP F + DLH++ H +  H        HGH
Sbjct: 2   DQVSRSLPPPFLSRDLHLHPHHQFQHQQQQQQQNHGH 38


>At3g54810.2 68416.m06066 zinc finger (GATA type) family protein
           GATA transcription factor 3, Arabidopsis thaliana,
           Y13650
          Length = 322

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +2

Query: 200 SPELGLQMRDEVSTSKPPRFTLDLHVNNHEKKYHLHAYNTPEHGHFASGVTV 355
           SPEL +   D V   +PP F  +  V   E  +  +  ++  H  F S   V
Sbjct: 70  SPELYVPFEDIVKVERPPSFVEETLVEKKEDSFSTNTDSSSSHSQFRSSSPV 121


>At3g54810.1 68416.m06065 zinc finger (GATA type) family protein
           GATA transcription factor 3, Arabidopsis thaliana,
           Y13650
          Length = 322

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +2

Query: 200 SPELGLQMRDEVSTSKPPRFTLDLHVNNHEKKYHLHAYNTPEHGHFASGVTV 355
           SPEL +   D V   +PP F  +  V   E  +  +  ++  H  F S   V
Sbjct: 70  SPELYVPFEDIVKVERPPSFVEETLVEKKEDSFSTNTDSSSSHSQFRSSSPV 121


>At5g46350.1 68418.m05705 WRKY family transcription factor contains
           similarity to WRKY-type DNA-binding protein
          Length = 326

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 23/100 (23%), Positives = 40/100 (40%)
 Frame = +2

Query: 47  VTNYEYKNSYVYCEEKKQCAHAEIQSKIDMSSPGVIVNLVNIGFDLRKLGVSPELGLQMR 226
           + NY Y +SY +     Q            +    +++   +GFDL    +SP+   ++ 
Sbjct: 8   LNNYHYTSSYNHYNINNQNMINLPYVSGPSAYNANMISSSQVGFDLPSKNLSPQGAFELG 67

Query: 227 DEVSTSKPPRFTLDLHVNNHEKKYHLHAYNTPEHGHFASG 346
            E+S S    F   L   N    Y+ + YN+ +  H   G
Sbjct: 68  FELSPSSSDFFNPSLDQEN--GLYNAYNYNSSQKSHEVVG 105


>At5g62240.1 68418.m07815 expressed protein various predicted
           proteins, Arabidopsis thaliana; expression supported by
           MPSS
          Length = 366

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +2

Query: 224 RDEVSTSKPPRFTLDLHVNNHEKKYHLHAYNTPEHGHFASGVTVRLPSRLLALEYTLNYP 403
           R++++TS   R   + ++N       L   NTP   HF +    RL + L A E + N  
Sbjct: 224 REQIATSNSKRHIRNKNINLEPVSTSLAKTNTPRSQHFQA---FRLRTSLRAKERSSNAK 280

Query: 404 TD 409
           TD
Sbjct: 281 TD 282


>At1g76390.1 68414.m08877 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 811

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 140 SPGVIVNLVNIGFDLRKLGVSPELGLQMRDEV 235
           S  ++ N+VNIG+D  K+ V P     + +E+
Sbjct: 379 SATILANIVNIGYDFDKVPVGPHHQTLVSEEI 410


>At1g26580.1 68414.m03238 expressed protein similar to putative MYB
           family transcription factor GB:AAD17429 GI:4335752 from
           [Arabidopsis thaliana]
          Length = 493

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 17  GERSYMAESRVTNYEYKNSYVYCEEKKQCAHAEIQSKI-DMSSP 145
           GER  + +   T++E   + V C EK +    E Q K+ D + P
Sbjct: 406 GERLNVEDDSCTSFELARNAVNCAEKDETVPGEQQKKLKDCNDP 449


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,320,041
Number of Sequences: 28952
Number of extensions: 243373
Number of successful extensions: 620
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)