Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F17
         (174 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q06342 Cluster: Basic juvenile hormone-suppressible pro...    50   8e-06
UniRef50_P31930 Cluster: Ubiquinol-cytochrome-c reductase comple...    30   8.8  

>UniRef50_Q06342 Cluster: Basic juvenile hormone-suppressible
           protein 1 precursor; n=17; Ditrysia|Rep: Basic juvenile
           hormone-suppressible protein 1 precursor - Trichoplusia
           ni (Cabbage looper)
          Length = 748

 Score = 50.4 bits (115), Expect = 8e-06
 Identities = 23/47 (48%), Positives = 29/47 (61%)
 Frame = +3

Query: 21  IESWWYKSRLGFPHRXXXXXXXXXXXXXQMFVIVTPVKTGMVLPSIE 161
           +ESWWYK R   PHR             QMFVIVTPVKT ++LP+++
Sbjct: 604 VESWWYK-RHRLPHRMLLPLGRRGGMPMQMFVIVTPVKTNLLLPNLD 649


>UniRef50_P31930 Cluster: Ubiquinol-cytochrome-c reductase complex
           core protein 1, mitochondrial precursor; n=22;
           Coelomata|Rep: Ubiquinol-cytochrome-c reductase complex
           core protein 1, mitochondrial precursor - Homo sapiens
           (Human)
          Length = 480

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 47  PWLSAQASVTSRNPRRFASPDVRHRD 124
           PW  A+ +V +  P RF   ++RHRD
Sbjct: 254 PWTYAEDAVPTLTPCRFTGSEIRHRD 279


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,340,892
Number of Sequences: 1657284
Number of extensions: 2503470
Number of successful extensions: 7710
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7709
length of database: 575,637,011
effective HSP length: 37
effective length of database: 514,317,503
effective search space used: 10286350060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)