Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F17
         (174 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    24   3.1  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    24   3.1  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    24   3.1  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    23   7.1  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    22   9.4  
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ...    22   9.4  
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    22   9.4  
SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces pombe...    22   9.4  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    22   9.4  

>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +2

Query: 29  LVV*ESPWLSAQASVTSRNPRRFASPD-VRHRDSRQDRY 142
           L V ++P+  A+AS  SRNP+ F  PD V H+   Q+R+
Sbjct: 261 LDVLDTPFDEAKAS--SRNPKPFEFPDGVTHKFG-QERF 296


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 142 IPVLTGVTMTNIWRGKPPRVPR 77
           IP+L  V +   W+GKPP + R
Sbjct: 77  IPLLL-VNIAKYWKGKPPLLKR 97


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 157 IDGKTIPVLTGVTMTNIWRGKPPRVPRG 74
           +D KT+    G  +  IW+ K P + +G
Sbjct: 623 VDKKTVGASQGGLVHTIWKEKGPEICKG 650


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 41  ESPWLSAQASVTSRNPRRFASPDVRHR 121
           + PW  A     SR P R +S   +HR
Sbjct: 270 QHPWFIADLPTHSRLPSRTSSFSSKHR 296


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 125 SHDDEHLERQTAEGSER*QKPVRKAK 48
           ++DDE    +T+ GS   +KP+ K +
Sbjct: 403 TNDDEANHSETSSGSSLAKKPILKRR 428


>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 388

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 2  WNRFQEHRE 28
          W RFQEH+E
Sbjct: 57 WPRFQEHKE 65


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 2   WNRFQEHRELV 34
           WN +Q+HRE V
Sbjct: 101 WNLYQKHREAV 111


>SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 166 TYSIDGKTIPVLTGVTMTNIW 104
           T + +GKTI + TGV+    W
Sbjct: 228 TLTSNGKTIKIPTGVSKDTQW 248


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 119 DDEHLERQTAEGSER*QKPVRKAKATLIPPTLDA 18
           +DEHL  Q +   E  ++P+    +T  P   DA
Sbjct: 447 EDEHLNLQGSFIEESTKQPISSKPSTSSPDMTDA 480


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 687,316
Number of Sequences: 5004
Number of extensions: 9391
Number of successful extensions: 33
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 38
effective length of database: 2,172,326
effective search space used: 41274194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)