Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F17
         (174 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0193 - 13954819-13954950,13955340-13955375                       29   0.70 
02_05_0935 - 32859353-32859360,32859476-32860438,32860535-32860757     27   2.1  
01_06_0015 + 25586433-25586571,25586684-25587231                       26   3.7  
05_07_0291 - 29020032-29020660,29020747-29020817,29021020-290211...    26   4.9  
04_01_0111 - 1136354-1136793,1136878-1136959,1137574-1137657,113...    25   6.5  
05_07_0285 + 28982502-28982782,28982888-28982989,28983189-289840...    25   8.6  

>10_07_0193 - 13954819-13954950,13955340-13955375
          Length = 55

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 100 GKPPRVPRGNRSLCGKPRRLLYH 32
           G+ PR+PR    LC  P R +YH
Sbjct: 19  GRLPRLPRHQEFLCFHPHRRVYH 41


>02_05_0935 - 32859353-32859360,32859476-32860438,32860535-32860757
          Length = 397

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 119 DDEHLERQTAEGSER*QKPVRKAKATLIPPTLDALETCS 3
           D ++ E+    G  R +KPV  + AT  PP+  A    S
Sbjct: 113 DSKYCEKHMHRGKNRSRKPVEMSLATPPPPSSSATSAAS 151


>01_06_0015 + 25586433-25586571,25586684-25587231
          Length = 228

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 148 KTIPVLTGVTMTNIWRGKPPRVPRGNRSLCGKP 50
           K +P  T   + N WR K  R PRG   L  +P
Sbjct: 96  KHLPGRTDNEIKNYWRTKIHRKPRGRSQLLQEP 128


>05_07_0291 -
           29020032-29020660,29020747-29020817,29021020-29021194,
           29021451-29021571,29021686-29022036
          Length = 448

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 160 SIDGKTIPVLTGVTMTNIW 104
           S D   +PV+ GVT+ N+W
Sbjct: 362 SYDPSKLPVVDGVTIKNVW 380


>04_01_0111 -
           1136354-1136793,1136878-1136959,1137574-1137657,
           1137749-1137931,1138263-1138437,1138539-1138777
          Length = 400

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 130 TGVTMTNIWRGKP-PRVPRGNRSLCGKPRRLLYHQLSMLLKPV 5
           +G T   + +G P P VPR     C KPRR+  +  S  ++PV
Sbjct: 218 SGKTYYCVTKGVPRPSVPR-----CNKPRRVDVYYSSWCIRPV 255


>05_07_0285 +
           28982502-28982782,28982888-28982989,28983189-28984006,
           28984594-28985050,28985203-28985242
          Length = 565

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 6/32 (18%)
 Frame = -3

Query: 157 IDGKTIPVLTGVTMTNI------WRGKPPRVP 80
           +DG T PV+TG  +TN+        GKP  +P
Sbjct: 75  VDGDTSPVVTGEPITNLSLSSGTTHGKPKFIP 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,788,433
Number of Sequences: 37544
Number of extensions: 73090
Number of successful extensions: 258
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 14,793,348
effective HSP length: 37
effective length of database: 13,404,220
effective search space used: 268084400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)