Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F17
         (174 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46392| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.1  
SB_9503| Best HMM Match : Bac_DNA_binding (HMM E-Value=3.3)            25   7.1  
SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.1  
SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.4  

>SB_46392| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
 Frame = +2

Query: 41  ESPWLSAQASVTSRNPRRFAS----PDVRHRDSRQDRYGFT 151
           +S W   ++ + S  P RF S    P    +DSRQD   F+
Sbjct: 86  QSQWAGDRSQIMSATPNRFPSYASGPGTPFQDSRQDTSVFS 126


>SB_9503| Best HMM Match : Bac_DNA_binding (HMM E-Value=3.3)
          Length = 110

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 100 GKPPRVPRGNRSLCGKPRRLLYHQLSMLLKPVP 2
           GKPPR P+   SL     +   H + +  KP+P
Sbjct: 65  GKPPRKPQKTASLKEVLEKFSNHNVIIAPKPMP 97


>SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1106

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 100 GKPPRVPRGNRSLCGKPRRLLYHQLSMLLKPVP 2
           GKPPR P+   SL     +   H + +  KP+P
Sbjct: 800 GKPPRKPQKTASLKEVLEKFSNHNVIIAPKPMP 832


>SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2557

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -2

Query: 128  GSHDDEHLERQTAEGSER*QKPVRKAKATLIPPTL 24
            G  +DE ++R  A+  ++ +   R+    L+PP L
Sbjct: 2459 GLSEDERMKRVAAKMEQKFKSEQRRVSNALVPPAL 2493


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,408,930
Number of Sequences: 59808
Number of extensions: 80078
Number of successful extensions: 199
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 16,821,457
effective HSP length: 37
effective length of database: 14,608,561
effective search space used: 292171220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)