Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F17
         (174 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045639-8|AAC02566.1|  649|Caenorhabditis elegans Hypothetical ...    28   0.77 
U64858-2|AAN84866.1| 1310|Caenorhabditis elegans Roller: helical...    26   4.1  
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical...    26   4.1  
U80453-3|AAV58885.1|  434|Caenorhabditis elegans Serine palmitoy...    25   5.4  
U80453-2|AAK31446.1|  458|Caenorhabditis elegans Serine palmitoy...    25   5.4  
Z49911-11|CAA90135.2|  452|Caenorhabditis elegans Hypothetical p...    25   9.5  
Z36948-6|CAA85414.2|  452|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>AF045639-8|AAC02566.1|  649|Caenorhabditis elegans Hypothetical
           protein B0212.1 protein.
          Length = 649

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 131 DGSHDDEHLERQTAEGS 81
           DGSH+DEH E++   GS
Sbjct: 332 DGSHEDEHFEKKIMPGS 348


>U64858-2|AAN84866.1| 1310|Caenorhabditis elegans Roller: helically
           twisted, animalsroll when moving protein 3, isoform c
           protein.
          Length = 1310

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 10  VSRASRVGGIRVALAFRTGFCYLSEP 87
           ++R S   G+  + +FRTGF Y S P
Sbjct: 334 LNRYSPASGVSASKSFRTGFGYPSAP 359


>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform a
            protein.
          Length = 2456

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 10   VSRASRVGGIRVALAFRTGFCYLSEP 87
            ++R S   G+  + +FRTGF Y S P
Sbjct: 1480 LNRYSPASGVSASKSFRTGFGYPSAP 1505


>U80453-3|AAV58885.1|  434|Caenorhabditis elegans Serine palmitoyl
           transferase familyprotein 1, isoform b protein.
          Length = 434

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 122 HDDEHLERQTAEGSER*QKPVRKAKA 45
           +D EHLER   E  +R +K  +KAK+
Sbjct: 176 NDMEHLERLLLEQEQRDKKDPKKAKS 201


>U80453-2|AAK31446.1|  458|Caenorhabditis elegans Serine palmitoyl
           transferase familyprotein 1, isoform a protein.
          Length = 458

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 122 HDDEHLERQTAEGSER*QKPVRKAKA 45
           +D EHLER   E  +R +K  +KAK+
Sbjct: 200 NDMEHLERLLLEQEQRDKKDPKKAKS 225


>Z49911-11|CAA90135.2|  452|Caenorhabditis elegans Hypothetical
           protein D2089.1a protein.
          Length = 452

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 77  SRNPRRFASPDVRHRDSRQDR 139
           SR+PRR  SP  R R   +DR
Sbjct: 275 SRSPRRRRSPSPRRRRDSRDR 295


>Z36948-6|CAA85414.2|  452|Caenorhabditis elegans Hypothetical
           protein D2089.1a protein.
          Length = 452

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 77  SRNPRRFASPDVRHRDSRQDR 139
           SR+PRR  SP  R R   +DR
Sbjct: 275 SRSPRRRRSPSPRRRRDSRDR 295


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,875,249
Number of Sequences: 27780
Number of extensions: 57065
Number of successful extensions: 193
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 12,740,198
effective HSP length: 38
effective length of database: 11,684,558
effective search space used: 222006602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)