Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F17
         (174 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65180.1 68414.m07390 DC1 domain-containing protein contains ...    27   1.3  
At2g28470.1 68415.m03460 beta-galactosidase, putative / lactase,...    26   2.9  
At1g36095.1 68414.m04487 hypothetical protein contains Pfam doma...    26   2.9  
At1g08210.1 68414.m00907 aspartyl protease family protein contai...    26   2.9  
At4g34220.1 68417.m04862 leucine-rich repeat transmembrane prote...    25   5.1  
At1g64255.1 68414.m07280 SWIM zinc finger family protein contain...    25   5.1  
At5g47140.1 68418.m05811 zinc finger (GATA type) family protein ...    25   6.7  
At4g17570.1 68417.m02627 zinc finger (GATA type) family protein        25   8.9  
At2g07040.1 68415.m00805 leucine-rich repeat transmembrane prote...    25   8.9  

>At1g65180.1 68414.m07390 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 653

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = -3

Query: 100 GKPPRVPRGNRSLCGKP--RRLLYH 32
           GKPP    GN SLCGK     + YH
Sbjct: 186 GKPPAYTDGNCSLCGKKIFDEMFYH 210


>At2g28470.1 68415.m03460 beta-galactosidase, putative / lactase,
           putative similar to Beta-galactosidase precursor
           SP:P48980 from [Lycopersicon esculentum]
          Length = 852

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -3

Query: 79  RGNRSL--CGKPRRLLYHQLSMLLKP 8
           R N+ L  CGKP + LYH     LKP
Sbjct: 687 RANKCLKNCGKPSQTLYHVPRSWLKP 712


>At1g36095.1 68414.m04487 hypothetical protein contains Pfam domain,
           PF04937: Protein of unknown function (DUF 659)
          Length = 301

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
 Frame = -2

Query: 125 SHDDEHLERQTAE--GSER*QKPVRKAKATL---IPPTL 24
           S+DD   E + AE  G+ER Q PV+K K  +   + PTL
Sbjct: 91  SYDDYGEEEEAAEVLGNERRQPPVKKQKGLMDMFVCPTL 129


>At1g08210.1 68414.m00907 aspartyl protease family protein contains
           Pfam profile PF00026: Eukaryotic aspartyl protease;
           similar to CND41, chloroplast nucleoid DNA binding
           protein (GI:2541876) {Nicotiana tabacum}
          Length = 492

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 163 YSIDGKTIPVLTGVTMTNIWRGKPPR 86
           + +DG + P L G+  T +  G PPR
Sbjct: 70  FPVDGASDPFLVGLYYTKVKLGTPPR 95


>At4g34220.1 68417.m04862 leucine-rich repeat transmembrane protein
           kinase, putative protein kinase TMKL1, Arabidopsis
           thaliana, PID:E353150
          Length = 757

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 76  GNRSLCGKPRRLLYHQLSMLLKP 8
           GN+ LCGKP ++L    S L  P
Sbjct: 276 GNQELCGKPLKILCSIPSTLSNP 298


>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
           Pfam profile PF04434: SWIM zinc finger
          Length = 750

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/45 (24%), Positives = 17/45 (37%)
 Frame = +1

Query: 34  GIRVALAFRTGFCYLSEPSAXXXXXXXXXXXXXXXXWFYHQLNMS 168
           GIR  +  R G C +S P                  W YH+ +++
Sbjct: 435 GIREKVTQRKGLCLISSPHPDIIAVVNESGSQWQEPWAYHRFSLN 479


>At5g47140.1 68418.m05811 zinc finger (GATA type) family protein
           contains Pfam:PF00320 GATA zinc finger domain
          Length = 470

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 127 GVTMTNIWRGKPPRVP 80
           GVT T +WR  PP  P
Sbjct: 11  GVTSTPLWRNGPPEKP 26


>At4g17570.1 68417.m02627 zinc finger (GATA type) family protein
          Length = 510

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 127 GVTMTNIWRGKPPRVP 80
           GVT T +WR  PP  P
Sbjct: 11  GVTNTPLWRNGPPEKP 26


>At2g07040.1 68415.m00805 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 647

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 91  PRVPRGNRSLCGKP 50
           P++  GN+ LCGKP
Sbjct: 206 PKLFEGNKGLCGKP 219


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,716,955
Number of Sequences: 28952
Number of extensions: 54564
Number of successful extensions: 168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 12,070,560
effective HSP length: 38
effective length of database: 10,970,384
effective search space used: 208437296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)