Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F16
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc...    28   0.97 
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    26   5.2  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   6.8  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   9.0  

>SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 349

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +2

Query: 194 HFTTYCLQLFYHILFLLKFINKKMLYSVVGVPGFRDSCRDVTGCNLCFNLT 346
           HF+   L+LF  I+F +  I     +S+     +R++   V G NLCFNL+
Sbjct: 279 HFSQLMLKLFRVIIFTIPQIR----FSIYQEISYREN--QVGGFNLCFNLS 323


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
            subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = -2

Query: 436  VQKNMKIQTEYYLSIDITKTYSRIYQMK*IGQVKAEIAPGHISTTVSKSGNS 281
            ++ N+ I  +YYL   ++K   RI++   +G+  + +  G  + T+S +  S
Sbjct: 929  LENNIPIDAKYYLENQLSKPLLRIFE-PILGEKASSLLHGDHTRTISMAAPS 979


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 176 LFVYFTHFTTYCLQLFYHI 232
           LF Y  +F    +QLFYHI
Sbjct: 452 LFPYMDNFIQLAVQLFYHI 470


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +2

Query: 197 FTTYCLQLFYHILFLLKFINKKMLYSVVGVPGFRDSCRDVTG--CNLCF 337
           F T   +LF+ + + L  + + ++Y++      + SC  +TG    LCF
Sbjct: 611 FETLVPRLFHLMRYTLTGVRRSVVYALTKFISVQTSCSWITGLTLRLCF 659


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,353,291
Number of Sequences: 5004
Number of extensions: 43457
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)