Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F16
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81139-1|CAB03477.1|  294|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AF039718-5|AAP68905.1|  760|Caenorhabditis elegans Prion-like-(q...    28   4.8  
AF039718-4|AAP68906.2|  696|Caenorhabditis elegans Prion-like-(q...    28   4.8  
AF068709-14|AAC19258.2|  312|Caenorhabditis elegans Serpentine r...    28   6.3  
Z93382-8|CAB07619.1|  160|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>Z81139-1|CAB03477.1|  294|Caenorhabditis elegans Hypothetical
           protein W05H5.1 protein.
          Length = 294

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/30 (53%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = +1

Query: 166 RNLSICLFHTLYNILFAV-VLPYSIFVEIY 252
           RNL I LF T+ +I+FAV +LP  I++ IY
Sbjct: 81  RNLRILLFMTVTDIVFAVSILPQIIYMLIY 110


>AF039718-5|AAP68905.1|  760|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
           isoform a protein.
          Length = 760

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +1

Query: 460 YFFTQRTY-DSNQWRSGGDGRGGR 528
           Y+ ++ ++ +SN+WRS G G GGR
Sbjct: 448 YYESRSSFSNSNEWRSRGGGNGGR 471


>AF039718-4|AAP68906.2|  696|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
           isoform b protein.
          Length = 696

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +1

Query: 460 YFFTQRTY-DSNQWRSGGDGRGGR 528
           Y+ ++ ++ +SN+WRS G G GGR
Sbjct: 350 YYESRSSFSNSNEWRSRGGGNGGR 373


>AF068709-14|AAC19258.2|  312|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 61 protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +2

Query: 152 VPLALGTFLFVYFTHFTTYCLQLFYHILFLLKFINKKMLYSVVGVPGFRDSCRDVT 319
           V L L T +F+YF  +    + +   ++F+LKFI +        +PGF   CR  T
Sbjct: 57  VQLDLLTNIFLYFNTWLGIRMAMHPSLIFILKFIEQ-------SIPGFLTWCRYFT 105


>Z93382-8|CAB07619.1|  160|Caenorhabditis elegans Hypothetical
           protein F45G2.10 protein.
          Length = 160

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 345 VKLKQRLHPVTSRQLSLNPGTPTTEYNI 262
           VKL + LHP     +S+ PG+ +TE +I
Sbjct: 102 VKLLRSLHPKVKVSVSITPGSHSTEESI 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,993,029
Number of Sequences: 27780
Number of extensions: 246701
Number of successful extensions: 586
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)