Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F13
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48410| Best HMM Match : Lig_chan (HMM E-Value=3.5e-05)              30   1.7  
SB_54471| Best HMM Match : PHD (HMM E-Value=4.9e-08)                   29   4.0  
SB_46123| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)            29   4.0  
SB_44560| Best HMM Match : DUF1086 (HMM E-Value=1.2)                   28   5.3  
SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)                28   7.0  
SB_48408| Best HMM Match : Lig_chan (HMM E-Value=0.19)                 27   9.2  
SB_36053| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_767| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   9.2  
SB_26471| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_48410| Best HMM Match : Lig_chan (HMM E-Value=3.5e-05)
          Length = 1084

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -2

Query: 515 IHNNEYF*NLNMYDSFQNTLQNINILSA 432
           I ++EYF   N+  SF NT  NINI+SA
Sbjct: 24  ILSDEYFPAQNISSSFPNTQVNINIISA 51


>SB_54471| Best HMM Match : PHD (HMM E-Value=4.9e-08)
          Length = 352

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 96  ESCQIKWLDCRVQPVYRHLGMLQWSSPLCEHL 1
           +SC+I+WL      + +  G  +W  P CE L
Sbjct: 316 QSCEIEWLHIECDGLRQVPGEDEWICPFCEEL 347


>SB_46123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 771

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = +3

Query: 54  PVGPYSQAILSD---KTLYISGVLGMDRDAQLVSGGVGAQTRQVLENLKHVVEAGGGSLE 224
           P  PYS A++SD    + +   V  ++ +  LV GG G + + V ++L  +  +  G  E
Sbjct: 419 PTTPYSPAVMSDGVPSSRWGHAVCAINENEALVVGGQGPKFQMVKDSLWLLSSSAAGEFE 478


>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
          Length = 797

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -1

Query: 225 TPKIHLPPQLHASSFLKLGASVLPLHQIPTAHHDPCRVLPIY 100
           +P++H  P+    ++      VLP +  P  HH P   +P Y
Sbjct: 516 SPRVHQSPRTPVPAYFT--PRVLPAYTTPRVHHSPRTPVPAY 555


>SB_44560| Best HMM Match : DUF1086 (HMM E-Value=1.2)
          Length = 918

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 96  LYISGVLGMDRDAQLVSGGVGAQTRQVLENLKHVVEAGGGSLESVIKTTIL 248
           LY +GV G   +  +       QTRQ+L  + ++++    S++ V   T+L
Sbjct: 548 LYFTGVWGRYSNGSVKETSCDNQTRQILGRIDNLIKCATESIQPVEVETVL 598


>SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
          Length = 1145

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 415 PASVMTRSPLRAIASISTAAFRGSLV 338
           P +++  SP+  + SI+ AA RGSL+
Sbjct: 734 PCALVMTSPIAVVCSITAAARRGSLI 759


>SB_48408| Best HMM Match : Lig_chan (HMM E-Value=0.19)
          Length = 705

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 515 IHNNEYF*NLNMYDSFQNTLQNINILSA 432
           I + EYF   N+   F NT  NINI+SA
Sbjct: 24  ILSEEYFPAQNILSIFPNTKVNINIISA 51


>SB_36053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 259 WTIFNALIKFMLNIFLKIALHGL 327
           WT+ NA+   +L   L +ALHGL
Sbjct: 8   WTVLNAVAGLVLPSVLVVALHGL 30


>SB_767| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -3

Query: 208 PASTTCFKFSKTWRVCAPTPPDTNCASR-SMPSTP 107
           PA   C K+ K   +C P P   N  S+ S P TP
Sbjct: 128 PAMFDCSKYLKDDMMCVPLPETPNPTSKTSSPPTP 162


>SB_26471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 566

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 103 YREYSAWIVMRSWYL 147
           Y E+S+W+V R+W+L
Sbjct: 342 YGEFSSWLVWRTWFL 356


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,353,021
Number of Sequences: 59808
Number of extensions: 407798
Number of successful extensions: 813
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)