Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_F10
(514 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g17490.1 68416.m02234 F-box family protein similar to F-box p... 37 0.009
At3g17480.1 68416.m02233 F-box family protein contains F-box dom... 32 0.20
At4g39760.1 68417.m05631 kelch repeat-containing F-box family pr... 29 1.8
At2g12480.1 68415.m01349 serine carboxypeptidase S10 family prot... 29 1.8
At3g13680.1 68416.m01727 F-box family protein contains F-box dom... 29 2.4
At5g07280.1 68418.m00830 leucine-rich repeat protein kinase, put... 28 3.2
At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl... 28 3.2
At1g33610.1 68414.m04160 leucine-rich repeat family protein cont... 28 3.2
At5g01160.1 68418.m00020 e-cadherin binding protein-related cont... 28 4.2
At1g29355.1 68414.m03589 expressed protein 27 5.6
At2g02500.1 68415.m00189 expressed protein contains Pfam profile... 27 7.4
At3g17620.1 68416.m02251 F-box family protein contains Pfam prof... 27 9.8
At2g17220.2 68415.m01989 protein kinase, putative similar to pro... 27 9.8
At1g74580.1 68414.m08639 pentatricopeptide (PPR) repeat-containi... 27 9.8
At1g50030.1 68414.m05614 target of rapamycin protein (TOR) ident... 27 9.8
>At3g17490.1 68416.m02234 F-box family protein similar to F-box
protein family, AtFBX9 (GI:20197985) [Arabidopsis
thaliana]; contains Pfam PF00646: F-box domain and
TIGRFAM TIGR01640: F-box protein interaction domain
Length = 388
Score = 36.7 bits (81), Expect = 0.009
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Frame = -2
Query: 324 LSITKASNGVRSWLLDSNGYTKTKNWNGYPPSVPLG-NINLFGMHSKPSDIYNGTFPSSN 148
+S+ + + W N +K P LG + F ++S S+++ ++
Sbjct: 21 ISLKRLRYTCKQWNALFNDQRFSKKHRDKAPKTYLGLTLKDFRIYSMSSNLHGLLHNNNI 80
Query: 147 NFMRSVNGKESSLKSENSFELRTILFCPGVILC 49
+ + GK SSL N FE+ I C G+ILC
Sbjct: 81 DLLMEFKGKLSSLNDLNDFEISQIYPCDGLILC 113
>At3g17480.1 68416.m02233 F-box family protein contains F-box domain
Pfam:PF00646
Length = 373
Score = 32.3 bits (70), Expect = 0.20
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 2 TLEENWHKFYELDWFTHKITPGQNKIVRNSNEFSLFKED 118
T+ +W KF +D +TH+ G + N+ ++F ED
Sbjct: 291 TIVTSWSKFLRVDLYTHRFYNGVTFFIDEENKAAVFSED 329
>At4g39760.1 68417.m05631 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 369
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/59 (30%), Positives = 21/59 (35%)
Frame = -1
Query: 343 WIAKRLVINNKGLKWCQIMATRFKRIYENKELEWISTFSTSWQHQSIWHAFKTFRHIQR 167
W V N WC I R+ IY NK W+ T S W+ FR R
Sbjct: 247 WKVTEAVFN---FSWCVIEKVRY--IYYNKNCWWLDTKSKDWRKIKGLDFLNKFRETDR 300
>At2g12480.1 68415.m01349 serine carboxypeptidase S10 family protein
similar to Serine carboxypeptidase II precursor
(Carboxypeptidase D) (CP-MII) (SP:P08818) [Hordeum
vulgare]
Length = 442
Score = 29.1 bits (62), Expect = 1.8
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Frame = -1
Query: 427 VLAFVVYEDILKEHIRL-----FEARRVRWTVEWIAKRLVINNKGLKWCQIMATRFKRIY 263
+L V Y I+++ +RL A R R EW +N G+ M KRI
Sbjct: 277 ILLDVCYPSIVQQELRLKKMNALHANRTRLPYEWTMCSNRLNYSGIDGYIDMLPSLKRII 336
Query: 262 ENKELEWI 239
+N+ WI
Sbjct: 337 QNQTPVWI 344
>At3g13680.1 68416.m01727 F-box family protein contains F-box domain
Pfam:PF00646
Length = 395
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 321 ITSLLAIHSTVQRTRRASKSLICSLRMSSYTTKASTFL 434
+TSL AI ST Q+ SKS IC + ++ K F+
Sbjct: 21 LTSLRAIRSTCQKWNSLSKSQICGRKATAAENKFLGFM 58
>At5g07280.1 68418.m00830 leucine-rich repeat protein kinase,
putative / extra sporogenous cells (ESP) identical to
extra sporogenous cells [Arabidopsis thaliana]
gi|23304947|emb|CAD42912; contains Pfam domains PF00560:
Leucine Rich Repeat and PF00069: Protein kinase domain
Length = 1192
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 276 SNGYTKTKNWNGYPPSVPLGNINLFGMHSKPSDIYNGTFP 157
SN Y +++G PS +GNI+L + PS +NG P
Sbjct: 189 SNLYMGLNSFSGQIPS-EIGNISLLKNFAAPSCFFNGPLP 227
>At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly
identical to ubiquitin-protein ligase 1 [Arabidopsis
thaliana] GI:7108521; E3, HECT-domain protein family;
similar to GI:7108521, GB:AAF36454 from [Arabidopsis
thaliana]
Length = 3891
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 478 NIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRL 377
N++ F G EFV +++ V YED + E IR+
Sbjct: 534 NVVSF--FNGEPEFVNELVTLVSYEDTVPEKIRI 565
>At1g33610.1 68414.m04160 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611
Length = 907
Score = 28.3 bits (60), Expect = 3.2
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -2
Query: 246 NGYPPSVPLGNINLFGMHSKP--SDIYNGTFPSSNNFMRSVNGKESSLKSENSFELRTI 76
N Y VP+ NL + + ++ G FP ++S+NG ES S N F L+TI
Sbjct: 710 NKYSGVVPMSFTNLINITNLDLSHNLLTGPFP----VLKSINGIESLDLSYNKFHLKTI 764
>At5g01160.1 68418.m00020 e-cadherin binding protein-related
contains weak similarity to E-cadherin binding protein
E7 [Mus musculus GP|9622093|gb|AAF89617
Length = 360
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 273 NGYTKTKNWNGYPPSVPLGNINLFGMHSKPS 181
+G ++ + GYPP P+ N+N G + PS
Sbjct: 294 SGGSEQSSLLGYPPPSPMTNLNFQGSYPPPS 324
>At1g29355.1 68414.m03589 expressed protein
Length = 307
Score = 27.5 bits (58), Expect = 5.6
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = -2
Query: 330 GLLSITKASNGVRSWLLDSNGYTKTKNWNGYPPSVPLGNINLFGMHSKPSD-IYNGTFPS 154
GL ++ + V L+ S K K+W + + ++ S+ I+ G PS
Sbjct: 213 GLSHVSDSQLTVSDPLISSLRLDKEKSWYDQTVEEEENHAQEAPLEARFSNAIHIGELPS 272
Query: 153 SNNFMRSVNGKESSLKSENSFE 88
+N +N E +KSE ++E
Sbjct: 273 ANPENTEINASEMEIKSEETWE 294
>At2g02500.1 68415.m00189 expressed protein contains Pfam profile:
PF01128 uncharacterized protein family UPF0007;
identical to GP:12697583 2-C-methyl-D-erythritol
4-phosphate cytidyltransferase {Arabidopsis thaliana};
identical to cDNA
4-Diphosphocytidyl-2C-methyl-D-erythritol synthase
(ISPD) GI:7385140
Length = 302
Score = 27.1 bits (57), Expect = 7.4
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 98 FSLFKEDSLPLTDLMKLLDEGKVPLYMSEG 187
F L K + L +TD + +++ K P+Y+S+G
Sbjct: 249 FELVKSEGLEVTDDVSIVEYLKHPVYVSQG 278
>At3g17620.1 68416.m02251 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 398
Score = 26.6 bits (56), Expect = 9.8
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = -2
Query: 228 VPLGNINLFGMHSKPSDIYNGTFPSSNNFMRSVNGKESSLKSENSFELRTILFCPGVILC 49
V L +INL G+H NG PS N + V SL + ++ + C G++LC
Sbjct: 67 VYLTSINLRGIH-------NGFDPSINRQAKLV-----SLNGTDQIDISEVYHCDGLLLC 114
Query: 48 VNQ 40
+++
Sbjct: 115 ISK 117
>At2g17220.2 68415.m01989 protein kinase, putative similar to
protein kinase APK1A [Arabidopsis thaliana]
Swiss-Prot:Q06548
Length = 413
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 192 SKPSDIYNGTFPSSNNFMRSVNGKESSLKSENSFEL 85
S +I +GTF SSNN + + S++ S + F +
Sbjct: 18 SSTGNISSGTFKSSNNTTTTGTSRGSNISSNSGFSV 53
>At1g74580.1 68414.m08639 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 763
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 177 IYNGTFPSSNNFMRSVNGKESSLKSENSFELRTILFCPGV 58
I G FP F ++G + LK EN+ E+ ++ GV
Sbjct: 453 ISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGV 492
>At1g50030.1 68414.m05614 target of rapamycin protein (TOR)
identical to pTOR [Arabidopsis thaliana] GI:12002902;
contains Pfam profiles PF00454 Phosphatidylinositol 3-
and 4-kinase, PF02259 FAT domain, PF02260 FATC domain
Length = 2481
Score = 26.6 bits (56), Expect = 9.8
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = -1
Query: 403 DILKEHIRLFEARRVRWTVEWIAKRLVINNKGL 305
+ L+ +R+ E R RW V+W + GL
Sbjct: 231 EALRACLRVIEKRETRWRVQWYYRMFEATQDGL 263
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,542,730
Number of Sequences: 28952
Number of extensions: 247020
Number of successful extensions: 745
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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