Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F09
         (489 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY525080-1|AAS13529.1|  362|Caenorhabditis elegans serine or cys...    32   0.26 
AC087794-5|AAM48555.1|  362|Caenorhabditis elegans Serpin protei...    32   0.26 
U70851-2|AAM97996.1|  671|Caenorhabditis elegans Osmotic avoidan...    29   2.4  
U70851-1|AAM97997.1|  699|Caenorhabditis elegans Osmotic avoidan...    29   2.4  
D38632-1|BAA07612.1|  672|Caenorhabditis elegans OSM-3 (kinesin ...    29   2.4  
AF149285-1|AAF99084.1|  672|Caenorhabditis elegans Osm-3 protein.      29   2.4  
U41535-13|AAB63405.1| 1075|Caenorhabditis elegans Hypothetical p...    27   9.7  

>AY525080-1|AAS13529.1|  362|Caenorhabditis elegans serine or
           cysteine protease inhibitorprotein.
          Length = 362

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 21/97 (21%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
 Frame = +2

Query: 206 DKNVVSSPLGVMMLMLLYKSGAGEGSRVEI-DKFLGDVDYSEATNPYISLSKTFSEMNPD 382
           ++++V SPL + +++ L  +G    SR +I +  L      +    +  +SK        
Sbjct: 21  NESLVFSPLSIALVLSLVHTGVRGSSRDQIRNTLLSGATDEQLVEHFSFVSKEVKNGTKG 80

Query: 383 FFT-MANKIYVGNKYTLDEKFTSSS-RQYQSEVETID 487
               +ANK+Y+   +T++  F S++ + Y ++ +++D
Sbjct: 81  VEVYLANKVYLKKGFTVNPTFLSTALKNYGADAKSLD 117


>AC087794-5|AAM48555.1|  362|Caenorhabditis elegans Serpin protein 3
           protein.
          Length = 362

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 21/97 (21%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
 Frame = +2

Query: 206 DKNVVSSPLGVMMLMLLYKSGAGEGSRVEI-DKFLGDVDYSEATNPYISLSKTFSEMNPD 382
           ++++V SPL + +++ L  +G    SR +I +  L      +    +  +SK        
Sbjct: 21  NESLVFSPLSIALVLSLVHTGVRGSSRDQIRNTLLSGATDEQLVEHFSFVSKEVKNGTKG 80

Query: 383 FFT-MANKIYVGNKYTLDEKFTSSS-RQYQSEVETID 487
               +ANK+Y+   +T++  F S++ + Y ++ +++D
Sbjct: 81  VEVYLANKVYLKKGFTVNPTFLSTALKNYGADAKSLD 117


>U70851-2|AAM97996.1|  671|Caenorhabditis elegans Osmotic avoidance
           abnormal protein3, isoform a protein.
          Length = 671

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 350 LSKTFSE-MNPDFFTMANKIYVGNKYTLDEKFTSSSRQYQSEVETID 487
           L+K+ SE +   +F    +I V NKY  D+K ++S   + S+  T D
Sbjct: 594 LAKSDSENLANSYFKPVKQINVINKYKSDQKLSTSKSLFPSKTPTFD 640


>U70851-1|AAM97997.1|  699|Caenorhabditis elegans Osmotic avoidance
           abnormal protein3, isoform b protein.
          Length = 699

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 350 LSKTFSE-MNPDFFTMANKIYVGNKYTLDEKFTSSSRQYQSEVETID 487
           L+K+ SE +   +F    +I V NKY  D+K ++S   + S+  T D
Sbjct: 622 LAKSDSENLANSYFKPVKQINVINKYKSDQKLSTSKSLFPSKTPTFD 668


>D38632-1|BAA07612.1|  672|Caenorhabditis elegans OSM-3 (kinesin
           protein) protein.
          Length = 672

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 350 LSKTFSE-MNPDFFTMANKIYVGNKYTLDEKFTSSSRQYQSEVETID 487
           L+K+ SE +   +F    +I V NKY  D+K ++S   + S+  T D
Sbjct: 595 LAKSDSENLANSYFKPVKQINVINKYKSDQKLSTSKSLFPSKTPTFD 641


>AF149285-1|AAF99084.1|  672|Caenorhabditis elegans Osm-3 protein.
          Length = 672

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 350 LSKTFSE-MNPDFFTMANKIYVGNKYTLDEKFTSSSRQYQSEVETID 487
           L+K+ SE +   +F    +I V NKY  D+K ++S   + S+  T D
Sbjct: 594 LAKSDSENLANSYFKPVKQINVINKYKSDQKLSTSKSLFPSKTPTFD 640


>U41535-13|AAB63405.1| 1075|Caenorhabditis elegans Hypothetical
           protein F18A1.1 protein.
          Length = 1075

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = +2

Query: 311 DVDYSEATNPYISLSKTFSEMNPDFFTMANKIYVGNKY----TLDEKFTSSSRQYQSEVE 478
           ++D    T+P   L +  S+  PD  T   +I V N+      + EK     ++Y++  +
Sbjct: 789 ELDIHLKTDPTAYLDEKSSDEEPDVMTWKRRILVKNRLDGRDVMGEKRKKEMKEYRANRK 848

Query: 479 TID 487
           TI+
Sbjct: 849 TIN 851


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,879,675
Number of Sequences: 27780
Number of extensions: 220626
Number of successful extensions: 637
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)