Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_F09
(489 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 31 0.42
At3g25140.1 68416.m03139 glycosyl transferase family 8 protein c... 29 2.2
At4g36160.1 68417.m05146 no apical meristem (NAM) family protein... 28 2.9
At4g04010.1 68417.m00571 Ulp1 protease family protein contains P... 28 3.9
At1g23110.1 68414.m02889 hypothetical protein 27 5.1
At4g13330.1 68417.m02083 expressed protein 27 6.8
At3g43600.1 68416.m04639 aldehyde oxidase, putative identical to... 27 6.8
At1g70900.1 68414.m08181 expressed protein 27 6.8
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 27 6.8
At3g47260.1 68416.m05133 Ulp1 protease family protein contains P... 27 9.0
At3g30440.1 68416.m03851 Ulp1 protease family protein contains P... 27 9.0
At2g14130.1 68415.m01574 Ulp1 protease family protein contains P... 27 9.0
At1g76740.1 68414.m08931 expressed protein weak similarity to fi... 27 9.0
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 31.1 bits (67), Expect = 0.42
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 296 DKFLGDVDYSEATNPYISLSKTFSEMNPDFFTMANKIYVGN 418
D++L Y + T P I KT S P+ N++Y+GN
Sbjct: 228 DRYLTIQQYVKTTTPSIPRRKTSSGFAPEMVDGYNRVYIGN 268
>At3g25140.1 68416.m03139 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 559
Score = 28.7 bits (61), Expect = 2.2
Identities = 18/77 (23%), Positives = 35/77 (45%)
Frame = +2
Query: 212 NVVSSPLGVMMLMLLYKSGAGEGSRVEIDKFLGDVDYSEATNPYISLSKTFSEMNPDFFT 391
+VV+ + + + +++K +G+ VE+ DY+ + Y+ + K N F
Sbjct: 281 HVVTDKMNLGAMQVMFKLKEYKGAHVEVKAV---EDYTFLNSSYVPVLKQLESANLQKFY 337
Query: 392 MANKIYVGNKYTLDEKF 442
NK+ K T + KF
Sbjct: 338 FENKLENATKDTTNMKF 354
>At4g36160.1 68417.m05146 no apical meristem (NAM) family protein
similar to NAC2 (GI:6456751) [Arabidopsis thaliana];
contains Pfam PF02365 : No apical meristem (NAM) protein
Length = 377
Score = 28.3 bits (60), Expect = 2.9
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 107 FYFFDHEYNRTALGDAIDKTSMKLLKEAYTSGKDKNVV--SSPLGVMMLMLLYKSGAGEG 280
+YFF H+ + G ++ +M +A +G+DK V S +G+ ++ YK A G
Sbjct: 69 WYFFSHKDKKYPTGTRTNRATMAGFWKA--TGRDKAVYDKSKLIGMRKTLVFYKGRAPNG 126
Query: 281 SRVE 292
+ +
Sbjct: 127 QKTD 130
>At4g04010.1 68417.m00571 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At1g32840, At2g06430,
At2g15140, At2g04980, At2g14130, At3g44500, At2g15190,
At3g47260, At5g34900, At3g29210, At2g02210, At3g32900
Length = 836
Score = 27.9 bits (59), Expect = 3.9
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Frame = +2
Query: 344 ISLSKTFSEMNPDFFTMANKIYVGNKY--TLDE---KFTSSSRQYQSE 472
+ L KT E NP+ F + ++VG+ + +DE +F + +QSE
Sbjct: 646 LELMKTRKESNPELFKNKSVVFVGSSFLNVIDESDMEFLDNKEGFQSE 693
>At1g23110.1 68414.m02889 hypothetical protein
Length = 261
Score = 27.5 bits (58), Expect = 5.1
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +2
Query: 209 KNVVSSPLGVMMLMLLYKSGAGEGSRVEIDKFLGDVDYSEATNPYISLSKTFSEMNPDFF 388
K +S +GV + LY + SR ++ K+L VDY+ I LS+ NP F
Sbjct: 120 KVYANSLIGVGIASSLYHA-----SRGKLRKYLRWVDYTMIATTTICLSRALRNENPKFL 174
Query: 389 TMANKI 406
A+ +
Sbjct: 175 MAASAL 180
>At4g13330.1 68417.m02083 expressed protein
Length = 428
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 161 YQWRHLRLSCCTRGQRNRMLARCR 90
YQWR LR + TR +++A CR
Sbjct: 114 YQWRSLRFNDDTRQSTVKVMAACR 137
>At3g43600.1 68416.m04639 aldehyde oxidase, putative identical to gi:
3172025; identical to cDNA putative aldehyde oxidase
(AO3) mRNA, partial cds GI:2792303
Length = 1321
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +2
Query: 245 LMLLYKSGAGEGSRVEIDKFLGDVDYSEATNPYISLSKTFSEMN 376
L L YK GAGE + V S +S+ + F+E N
Sbjct: 942 LALFYKDGAGEPHEYTLSSMWDKVGVSSKFEERVSVVREFNESN 985
>At1g70900.1 68414.m08181 expressed protein
Length = 244
Score = 27.1 bits (57), Expect = 6.8
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +2
Query: 209 KNVVSSPLGVMMLMLLYKSGAGEGSRVEIDKFLGDVDYSEATNPYISLSKTFSEMNPDFF 388
K +S +GV + LY S SR + K+L DY+ I L++ E NP F
Sbjct: 103 KVYANSLIGVGIASSLYHS-----SRGKFRKYLRWADYTMIATATICLTRALREENPKFL 157
Query: 389 TMANKI 406
A+ +
Sbjct: 158 MAASAL 163
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 27.1 bits (57), Expect = 6.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -1
Query: 330 ASL*STSPKNLSISTRLPSPAPDL*RSISIITPNGEDTTF 211
+SL +SP LS+S P P P +S ++P+ +T+
Sbjct: 100 SSLSPSSPPPLSLSPSSPPPPPPSSSPLSSLSPSSSSSTY 139
>At3g47260.1 68416.m05133 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At1g32840, At4g04010,
At2g06430, At2g15140, At2g04980, At2g14130, At3g44500,
At2g15190, At5g34900, At3g29210, At2g02210, At3g32900
Length = 820
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Frame = +2
Query: 344 ISLSKTFSEMNPDFFTMANKIYVGNKY--TLDE---KFTSSSRQYQSEVETI 484
+ L KT E NP+ F + ++VG+ + +DE +F + +Q + E I
Sbjct: 674 LELMKTRKESNPELFKNKSVVFVGSSFLNVIDESYMEFLDNKEGFQFQSEEI 725
>At3g30440.1 68416.m03851 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 601
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Frame = +2
Query: 344 ISLSKTFSEMNPDFFTMANKIYVGNKY--TLDE---KFTSSSRQYQSEVETI 484
+ L KT E NP+ F + ++VG+ + +DE +F + +Q + E I
Sbjct: 434 LELMKTRKESNPELFKNKSVVFVGSSFLNVIDESYMEFLDNKEGFQFQSEEI 485
>At2g14130.1 68415.m01574 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At1g32840, At4g04010,
At2g06430, At2g15140, At2g04980, At3g44500, At2g15190,
At3g47260, At5g34900, At3g29210, At2g02210, At3g32900
Length = 808
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Frame = +2
Query: 344 ISLSKTFSEMNPDFFTMANKIYVGNKY--TLDE---KFTSSSRQYQSEVETI 484
+ L KT E NP+ F + ++VG+ + +DE +F + +Q + E I
Sbjct: 662 LELMKTRKESNPELFKNKSVVFVGSSFLNVIDESYMEFLDNKEGFQFQSEEI 713
>At1g76740.1 68414.m08931 expressed protein weak similarity to
fimbriae-associated protein Fap1 (GI:3929312)
[Streptococcus parasanguinis]; weak similarity to 1MDa_1
protein (GI:24620455) [Caenorhabditis elegans]
Length = 1532
Score = 26.6 bits (56), Expect = 9.0
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +2
Query: 248 MLLYKSGAGEGSRVEIDKFLGDVDYSEATNPY-ISLSKTFSEMNPDFFTMANKIYVGNKY 424
+LL SG G E G D EA P I+ K S + PD T+ N + N+
Sbjct: 1383 LLLNSSGGGSNVSGETSILAGTADEDEAAGPIAIAFVKAMS-LTPDELTVKNHM---NEK 1438
Query: 425 TLDEK 439
DE+
Sbjct: 1439 AADEE 1443
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,263,267
Number of Sequences: 28952
Number of extensions: 205530
Number of successful extensions: 543
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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