Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F08
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...   120   2e-28
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    27   3.2  
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...    25   7.3  
SPCC4B3.09c |||mitochondrial ribosomal protein subunit L12|Schiz...    25   7.3  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    25   7.3  
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    25   7.3  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score =  120 bits (288), Expect = 2e-28
 Identities = 59/79 (74%), Positives = 65/79 (82%)
 Frame = +3

Query: 174 LNGSPGYINLCDALNAWQLVKELKEALGLPAAASFKHVSPAGAAVGLPLTKENASVCMVS 353
           L GSPGYINL DALN+W LVKEL+E +G+PAAASFKHVSPAGAAVGLPL+     V  VS
Sbjct: 224 LCGSPGYINLMDALNSWPLVKELRENIGIPAAASFKHVSPAGAAVGLPLSDVEKKVYFVS 283

Query: 354 DLLEALTPLACAYARARGA 410
           D+ E  TPLACAYARARGA
Sbjct: 284 DITE-FTPLACAYARARGA 301



 Score =  119 bits (286), Expect = 4e-28
 Identities = 53/84 (63%), Positives = 65/84 (77%)
 Frame = +1

Query: 406 GPNALTSSGDFVALSDACDEATARIISREVFDGIVAPGYTPEALNILRKKKGGNYCVLQM 585
           G + ++S GDF+ALSD  D  TARIISREV DG++APGY PEAL +L+KKKGG YCVLQM
Sbjct: 300 GADRMSSFGDFIALSDTVDVCTARIISREVSDGVIAPGYEPEALELLKKKKGGKYCVLQM 359

Query: 586 DPSYEPDLTERKTLYGLSLEQRRN 657
           DP Y P   E + +YG+SL+Q RN
Sbjct: 360 DPKYVPAEIETRQVYGISLQQHRN 383



 Score = 72.5 bits (170), Expect = 5e-14
 Identities = 31/51 (60%), Positives = 37/51 (72%)
 Frame = +2

Query: 11  QGFTHTSEYDLAISDYFRRQYSAGQSQLTLRYGMNPHQKPAQVFTTRDRLP 163
           + F  T+ YD AI+DYFR+QY+AG  QLTLRYG NPHQ PAQ F  +  LP
Sbjct: 170 KAFASTASYDAAITDYFRKQYAAGVDQLTLRYGANPHQSPAQAFMEQGPLP 220


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 201 LCDALNAWQLVKELKEALGLPAAASFK 281
           LCD LN ++LV  L     LP  +SF+
Sbjct: 237 LCDQLNDYELVPTLNAISPLPLRSSFR 263


>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/46 (28%), Positives = 16/46 (34%)
 Frame = +1

Query: 358 YWKXXXXXXXXXXXLAGPNALTSSGDFVALSDACDEATARIISREV 495
           +WK           LA  NAL    D       C   TA I+  +V
Sbjct: 88  FWKGNYDEALKSGFLAADNALMQDRDMQEDPSGCTATTALIVDHQV 133


>SPCC4B3.09c |||mitochondrial ribosomal protein subunit
           L12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 206

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 195 INLCDALNAWQLVKELKEALGLPAAASFKHVSPAGAA 305
           I+    L   +LVK+LKE L +   A    V+PA A+
Sbjct: 84  ISSLSLLETSELVKQLKEKLNIAEIAPMAAVAPAVAS 120


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 322 VKGSPTAAPAGDTCLKLAAAGRPSASFNSLTSCQAFNA 209
           + G P A  + D   KLAA G    + +SL+  Q+ N+
Sbjct: 7   LNGQPLAGKSDDLANKLAAFGLSQPNHSSLSEQQSTNS 44


>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 8/15 (53%), Positives = 14/15 (93%)
 Frame = -3

Query: 142 KHLGRFLMRIHTISE 98
           +H+GR ++R+HTIS+
Sbjct: 405 EHIGRAVVRVHTISD 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,497,527
Number of Sequences: 5004
Number of extensions: 46004
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)