Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F08
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0692 - 22197582-22198214,22198761-22198935,22199089-221991...    33   0.27 
08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621...    29   4.3  
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631...    28   5.7  
02_01_0305 + 2041370-2043114,2043764-2044121                           28   7.6  

>12_02_0692 -
           22197582-22198214,22198761-22198935,22199089-22199185,
           22199359-22199473,22199546-22199633,22199972-22200063,
           22200138-22200629,22201025-22201048,22201348-22203489
          Length = 1285

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = -3

Query: 400 ARAYAHASGVSASSKSDTIHTDAF-SLVKGSPTAAPAGDTCLKLAAAGRPSASFNSLTSC 224
           A  +  +SG S+SS + T    +  SL   S  A+P+     +LAAAG P++S ++  + 
Sbjct: 34  AALHRRSSGTSSSSSTSTSPPLSLASLTFLSSAASPSSSIFPRLAAAGLPASSLSAPLAA 93

Query: 223 QAFNASHKL 197
              +A H L
Sbjct: 94  SLSSAHHPL 102


>08_01_0703 +
           6212409-6212456,6212661-6212742,6214031-6214106,
           6214498-6214594,6214760-6214862,6214973-6215103,
           6215285-6215462,6215528-6215715,6215945-6216154,
           6216231-6216578,6216660-6216786,6217304-6217455
          Length = 579

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 47  ISDYFRRQYSAGQS-QLTLRYGMNPHQKPA 133
           + D F   ++   S + TLRYG NPHQK A
Sbjct: 248 VGDVFPPNFTVPLSLKSTLRYGENPHQKAA 277


>03_04_0016 +
           16461542-16461566,16462701-16462732,16463015-16463100,
           16463189-16463305,16463399-16463474,16463695-16463818,
           16464482-16464595,16464700-16464947
          Length = 273

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 421 LTRWAPRARAYAHASGVSASSKSDTIHTDAFSLVKGSPTAAPAGD 287
           +TRW     A   +SGV+A  +   + + A S+   +   APA D
Sbjct: 73  VTRWYDHISALLRSSGVTAEGEGVKVESTACSVSPTADQKAPAAD 117


>02_01_0305 + 2041370-2043114,2043764-2044121
          Length = 700

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -3

Query: 400 ARAYAHASGVSASSKSDTIHTDAFSLVKGSPTAAPAGDTCLKLAAAGRPSAS 245
           A A  HA+  S+SS +        S    +  AAP+  +   LAAA  PS++
Sbjct: 32  AAAARHAAAASSSSAARHAAAAPSSAATLATAAAPSSSSAATLAAAAAPSSA 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,388,133
Number of Sequences: 37544
Number of extensions: 356588
Number of successful extensions: 1315
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)