Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F08
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)             134   6e-32
SB_19609| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_51107| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  

>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score =  134 bits (324), Expect = 6e-32
 Identities = 60/79 (75%), Positives = 70/79 (88%)
 Frame = +3

Query: 174 LNGSPGYINLCDALNAWQLVKELKEALGLPAAASFKHVSPAGAAVGLPLTKENASVCMVS 353
           LNG+PG+INLCDA N+WQLV+EL ++LG+PAAASFKHVSPAGAAVG PLT + A VCMV 
Sbjct: 260 LNGAPGFINLCDAFNSWQLVRELHQSLGIPAAASFKHVSPAGAAVGTPLTPDEAKVCMVD 319

Query: 354 DLLEALTPLACAYARARGA 410
           D+L+ LTPLA AYARARGA
Sbjct: 320 DMLDRLTPLATAYARARGA 338



 Score =  122 bits (293), Expect = 3e-28
 Identities = 54/85 (63%), Positives = 68/85 (80%)
 Frame = +1

Query: 406 GPNALTSSGDFVALSDACDEATARIISREVFDGIVAPGYTPEALNILRKKKGGNYCVLQM 585
           G + ++S GD+VALSD CD ATA+IISREV DG++AP Y  EAL +L+KKKGG YC+LQM
Sbjct: 337 GADRMSSFGDWVALSDECDLATAKIISREVSDGVIAPSYQNEALEVLKKKKGGKYCILQM 396

Query: 586 DPSYEPDLTERKTLYGLSLEQRRND 660
           DPSYEP   E +T++GL LEQ RN+
Sbjct: 397 DPSYEPPALESRTIFGLQLEQLRNN 421



 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 31/52 (59%), Positives = 40/52 (76%)
 Frame = +2

Query: 11  QGFTHTSEYDLAISDYFRRQYSAGQSQLTLRYGMNPHQKPAQVFTTRDRLPL 166
           + F+HT+ YD+AISDYFR++YS   S + LRYGMNPHQKPAQ+ T    LP+
Sbjct: 206 KAFSHTASYDMAISDYFRKEYSENVSHIPLRYGMNPHQKPAQLMTMEPELPV 257


>SB_19609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 11/79 (13%)
 Frame = -3

Query: 343 HTDAFSLVKGSPTAAPAGDTCLKLAAAG-RPS---------ASFNSLTSCQAFNASHKLM 194
           + D+   +KG+ +A P  D C      G RP            + S++ C++ +    + 
Sbjct: 96  YKDSSHFLKGTQSANPHNDYCQHFVDTGQRPQNFIRDVVDVGEWMSVSGCRSVDVGQWMS 155

Query: 193 YPG-EPFSVGQWQTVASCK 140
             G     VGQW +V+ C+
Sbjct: 156 VSGCRSVDVGQWMSVSGCR 174


>SB_51107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 466

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = -3

Query: 388 AHASGVSASSKSDTIHTDAFSLVKGSPTAAPAGDTCLKLAAAGRPSAS 245
           A A G S   K DT+ T A   + GSP     G  CL+   A   + S
Sbjct: 358 AFAGGHSIRLKYDTVPTHALPWLPGSPATQRLGLFCLRHMCASPENCS 405


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,820,475
Number of Sequences: 59808
Number of extensions: 382213
Number of successful extensions: 1077
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)