Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F08
         (660 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protei...    30   1.2  
At3g14850.2 68416.m01876 expressed protein                             30   1.6  
At2g30900.1 68415.m03766 expressed protein                             28   6.3  
At5g10900.1 68418.m01265 calcineurin-like phosphoesterase family...    27   8.4  
At5g10770.1 68418.m01252 chloroplast nucleoid DNA-binding protei...    27   8.4  

>At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protein
           similar to SP|P12048 Bifunctional purine biosynthesis
           protein purH [Includes:
           Phosphoribosylaminoimidazolecarboxamide
           formyltransferase (EC 2.1.2.3) (AICAR transformylase);
           IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP
           synthetase) (ATIC)] {Bacillus subtilis}; contains Pfam
           profiles PF01808: AICARFT/IMPCHase bienzyme, PF02142:
           MGS-like domain
          Length = 596

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 11/52 (21%)
 Frame = +2

Query: 11  QGFTHTSEYDLAISDYFRRQYSAGQS-----------QLTLRYGMNPHQKPA 133
           + F H + YD A+S++  +Q    +            + +LRYG NPHQK A
Sbjct: 243 KAFQHVAAYDSAVSEWLWKQTEGKEKFPPSFTVPLVLKSSLRYGENPHQKAA 294


>At3g14850.2 68416.m01876 expressed protein
          Length = 321

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 250 ASFNSLTSCQAFNASHKLMYPGEPFSVGQWQTVASCKH 137
           A FN L   +  N   K+M+ G+  S+ QWQ++A   H
Sbjct: 52  ARFNGLQFLKK-NKGKKIMFVGDSLSLNQWQSLACMLH 88


>At2g30900.1 68415.m03766 expressed protein
          Length = 367

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 244 FNSLTSCQAFNASHKLMYPGEPFSVGQWQTVASCKH 137
           FN L          KLM+ G+  S+ QWQ++    H
Sbjct: 97  FNGLDFLGRIMKGKKLMFVGDSLSLNQWQSLTCLLH 132


>At5g10900.1 68418.m01265 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 600

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 15  ALHTPPSMTSP-YLTISVDNTPRVNHN*HSD 104
           A+  PP+ T P +++ +V+N PR+ H   SD
Sbjct: 485 AVLEPPNFTEPVFVSYTVENVPRLQHQIISD 515


>At5g10770.1 68418.m01252 chloroplast nucleoid DNA-binding protein,
           putative similar to CND41, chloroplast nucleoid DNA
           binding protein [Nicotiana tabacum] GI:2541876; contains
           Pfam profile PF00026: Eukaryotic aspartyl protease
          Length = 474

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 271 AAAGRPSASFNSLTSCQAFNASHKLMYPGEPFSVG 167
           AA G  S++  +  SC A N  + + Y  + FSVG
Sbjct: 191 AACGSLSSATGNAGSCSASNCIYGIQYGDQSFSVG 225


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,366,430
Number of Sequences: 28952
Number of extensions: 260732
Number of successful extensions: 817
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)