BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_F06 (511 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase... 88 6e-19 SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 66 3e-12 SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 59 4e-10 SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 26 3.8 SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|c... 26 3.8 SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar... 25 5.0 SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 25 6.6 SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c... 25 8.7 >SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase Fkh1|Schizosaccharomyces pombe|chr 2|||Manual Length = 112 Score = 88.2 bits (209), Expect = 6e-19 Identities = 40/72 (55%), Positives = 51/72 (70%) Frame = +1 Query: 283 DSSFDRDQPFTFQLGVGQVIKGWDQGLRDMCVGEKRKLTIPSSLGYGNRGAGNVIPPHAT 462 DSS DR PF +GVGQ+I+GWD+G+ M +GEK KLTI GYG RG +IPP++T Sbjct: 38 DSSVDRGSPFVCTIGVGQLIRGWDEGVPKMSLGEKAKLTITPDYGYGPRGFPGLIPPNST 97 Query: 463 LHFEVELINIGD 498 L F+VEL+ I D Sbjct: 98 LLFDVELLAIND 109 Score = 33.9 bits (74), Expect = 0.014 Identities = 13/19 (68%), Positives = 16/19 (84%) Frame = +2 Query: 224 KDGDMLTMHYTGTLSDGHK 280 K GD +TMHYTGTL++G K Sbjct: 18 KPGDRITMHYTGTLTNGKK 36 >SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomerase|Schizosaccharomyces pombe|chr 2|||Manual Length = 361 Score = 66.1 bits (154), Expect = 3e-12 Identities = 30/65 (46%), Positives = 45/65 (69%) Frame = +1 Query: 298 RDQPFTFQLGVGQVIKGWDQGLRDMCVGEKRKLTIPSSLGYGNRGAGNVIPPHATLHFEV 477 + +PF F LG G+VI+GWD G+ M G +RK+TIP+ + YGN+ IP ++TL FEV Sbjct: 297 KGKPFAFILGRGEVIRGWDVGVAGMQEGGERKITIPAPMAYGNQSIPG-IPKNSTLVFEV 355 Query: 478 ELINI 492 +L+ + Sbjct: 356 KLVRV 360 >SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |Schizosaccharomyces pombe|chr 1|||Manual Length = 362 Score = 58.8 bits (136), Expect = 4e-10 Identities = 27/63 (42%), Positives = 44/63 (69%) Frame = +1 Query: 304 QPFTFQLGVGQVIKGWDQGLRDMCVGEKRKLTIPSSLGYGNRGAGNVIPPHATLHFEVEL 483 +PFTF LG+ +VIKGWD G+ M VG +R + IP+++ YG++ IP ++ L F+V+L Sbjct: 300 KPFTFNLGLEEVIKGWDVGIVGMQVGGERTIHIPAAMAYGSKRLPG-IPANSDLVFDVKL 358 Query: 484 INI 492 + + Sbjct: 359 LAV 361 >SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||Manual Length = 342 Score = 25.8 bits (54), Expect = 3.8 Identities = 11/32 (34%), Positives = 17/32 (53%) Frame = +2 Query: 413 WATAIAEPAM*SHLTPLFTSKSN*STSVTHPR 508 W T + + H+ +FT+ N ST +TH R Sbjct: 290 WVTILPARKLGPHMEHVFTNLQNNSTPMTHVR 321 >SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|chr 2|||Manual Length = 221 Score = 25.8 bits (54), Expect = 3.8 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%) Frame = +1 Query: 430 GAGN-VIPPHATLHFEVEL 483 G GN +IPP + H+EVEL Sbjct: 44 GHGNLIIPPDVSAHYEVEL 62 >SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosaccharomyces pombe|chr 1|||Manual Length = 859 Score = 25.4 bits (53), Expect = 5.0 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +1 Query: 421 GNRGAGNVIPPHATLHFEVELINIGDSP 504 G G+G + P AT +FE ++ NI D P Sbjct: 376 GKLGSGLINPLVATQNFEYKMSNILDKP 403 >SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosaccharomyces pombe|chr 1|||Manual Length = 576 Score = 25.0 bits (52), Expect = 6.6 Identities = 11/43 (25%), Positives = 19/43 (44%) Frame = +1 Query: 289 SFDRDQPFTFQLGVGQVIKGWDQGLRDMCVGEKRKLTIPSSLG 417 SF +D + G ++ WD + CV E+ + P + G Sbjct: 305 SFSQDGNYLLSRGEDNALRVWDLRNSNKCVNERIDILTPKAGG 347 >SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr 2|||Manual Length = 618 Score = 24.6 bits (51), Expect = 8.7 Identities = 9/30 (30%), Positives = 18/30 (60%) Frame = +2 Query: 146 LWSYDRRSEVTELKMMSERARMYYESKDGD 235 +W+ R +T+LK +R ++Y+ DG+ Sbjct: 277 VWARFRDLSITKLKDTYDRLNIHYDEYDGE 306 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,064,297 Number of Sequences: 5004 Number of extensions: 38904 Number of successful extensions: 94 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 92 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 94 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 204242806 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -