Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F06
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...    88   6e-19
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    66   3e-12
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    59   4e-10
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    26   3.8  
SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|c...    26   3.8  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   5.0  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    25   6.6  
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    25   8.7  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score = 88.2 bits (209), Expect = 6e-19
 Identities = 40/72 (55%), Positives = 51/72 (70%)
 Frame = +1

Query: 283 DSSFDRDQPFTFQLGVGQVIKGWDQGLRDMCVGEKRKLTIPSSLGYGNRGAGNVIPPHAT 462
           DSS DR  PF   +GVGQ+I+GWD+G+  M +GEK KLTI    GYG RG   +IPP++T
Sbjct: 38  DSSVDRGSPFVCTIGVGQLIRGWDEGVPKMSLGEKAKLTITPDYGYGPRGFPGLIPPNST 97

Query: 463 LHFEVELINIGD 498
           L F+VEL+ I D
Sbjct: 98  LLFDVELLAIND 109



 Score = 33.9 bits (74), Expect = 0.014
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +2

Query: 224 KDGDMLTMHYTGTLSDGHK 280
           K GD +TMHYTGTL++G K
Sbjct: 18  KPGDRITMHYTGTLTNGKK 36


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 66.1 bits (154), Expect = 3e-12
 Identities = 30/65 (46%), Positives = 45/65 (69%)
 Frame = +1

Query: 298 RDQPFTFQLGVGQVIKGWDQGLRDMCVGEKRKLTIPSSLGYGNRGAGNVIPPHATLHFEV 477
           + +PF F LG G+VI+GWD G+  M  G +RK+TIP+ + YGN+     IP ++TL FEV
Sbjct: 297 KGKPFAFILGRGEVIRGWDVGVAGMQEGGERKITIPAPMAYGNQSIPG-IPKNSTLVFEV 355

Query: 478 ELINI 492
           +L+ +
Sbjct: 356 KLVRV 360


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 58.8 bits (136), Expect = 4e-10
 Identities = 27/63 (42%), Positives = 44/63 (69%)
 Frame = +1

Query: 304 QPFTFQLGVGQVIKGWDQGLRDMCVGEKRKLTIPSSLGYGNRGAGNVIPPHATLHFEVEL 483
           +PFTF LG+ +VIKGWD G+  M VG +R + IP+++ YG++     IP ++ L F+V+L
Sbjct: 300 KPFTFNLGLEEVIKGWDVGIVGMQVGGERTIHIPAAMAYGSKRLPG-IPANSDLVFDVKL 358

Query: 484 INI 492
           + +
Sbjct: 359 LAV 361


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 413 WATAIAEPAM*SHLTPLFTSKSN*STSVTHPR 508
           W T +    +  H+  +FT+  N ST +TH R
Sbjct: 290 WVTILPARKLGPHMEHVFTNLQNNSTPMTHVR 321


>SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = +1

Query: 430 GAGN-VIPPHATLHFEVEL 483
           G GN +IPP  + H+EVEL
Sbjct: 44  GHGNLIIPPDVSAHYEVEL 62


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 421 GNRGAGNVIPPHATLHFEVELINIGDSP 504
           G  G+G + P  AT +FE ++ NI D P
Sbjct: 376 GKLGSGLINPLVATQNFEYKMSNILDKP 403


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = +1

Query: 289 SFDRDQPFTFQLGVGQVIKGWDQGLRDMCVGEKRKLTIPSSLG 417
           SF +D  +    G    ++ WD    + CV E+  +  P + G
Sbjct: 305 SFSQDGNYLLSRGEDNALRVWDLRNSNKCVNERIDILTPKAGG 347


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 146 LWSYDRRSEVTELKMMSERARMYYESKDGD 235
           +W+  R   +T+LK   +R  ++Y+  DG+
Sbjct: 277 VWARFRDLSITKLKDTYDRLNIHYDEYDGE 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,064,297
Number of Sequences: 5004
Number of extensions: 38904
Number of successful extensions: 94
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)