Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_F06
(511 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0) 105 3e-23
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 3e-13
SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4) 28 3.9
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 28 5.1
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_24438| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
>SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)
Length = 266
Score = 105 bits (251), Expect = 3e-23
Identities = 47/73 (64%), Positives = 54/73 (73%)
Frame = +1
Query: 283 DSSFDRDQPFTFQLGVGQVIKGWDQGLRDMCVGEKRKLTIPSSLGYGNRGAGNVIPPHAT 462
DSS DR + F F LG G VI+GW+QGL DMC+GEKRKLTIP L YG GAG IPPHAT
Sbjct: 63 DSSLDRGKTFDFTLGKGMVIQGWEQGLLDMCIGEKRKLTIPPHLAYGENGAGAAIPPHAT 122
Query: 463 LHFEVELINIGDS 501
L+ +VEL+ I S
Sbjct: 123 LYMDVELVEIQGS 135
Score = 32.3 bits (70), Expect = 0.24
Identities = 15/47 (31%), Positives = 33/47 (70%)
Frame = +2
Query: 140 VALWSYDRRSEVTELKMMSERARMYYESKDGDMLTMHYTGTLSDGHK 280
+AL + + + E+ +++++S+ + ++ GD L+MHYTG L++G+K
Sbjct: 16 LALGAEEPKGEL-KIEVVSKPEKCTRKTHVGDTLSMHYTGRLANGNK 61
>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 71.7 bits (168), Expect = 3e-13
Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Frame = +1
Query: 304 QPFTFQLGVGQVIKGWDQGLRDMCVGEKRKLTIPSSLGYGNRGA----GNVIPPHATLHF 471
QPF F +G G VIKG++QG+ MCVG+KRK+ IP +L YG +G+ GN+ + TL +
Sbjct: 146 QPFEFTIGGGTVIKGFEQGVTGMCVGQKRKIVIPPALAYGKKGSGDVPGNLDLTNTTLTY 205
Query: 472 EVELINIGDSPP 507
+EL ++ PP
Sbjct: 206 NLELFDVRKPPP 217
>SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1390
Score = 28.7 bits (61), Expect = 2.9
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +1
Query: 280 VDSSF--DRDQPFTFQLGVGQVIKGWDQGLRDMCVGEKRKL-TIPSSLGYGNRG 432
+DS+F + +P +F +G GWD G G +KL T PS+ G N G
Sbjct: 292 LDSTFIWSKIRPMSFPCVLGMHEVGWDDGTFHSSTGAAQKLGTRPSNGGTKNSG 345
>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3511
Score = 28.3 bits (60), Expect = 3.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 420 VAQGRRDGQFTFLTYTHVSKSLIPAFDDLTD 328
+ +G +DG + FL H+S S +P D L +
Sbjct: 3218 IKEGVKDGNWVFLANCHLSLSWMPQLDKLVE 3248
>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
Length = 428
Score = 28.3 bits (60), Expect = 3.9
Identities = 23/66 (34%), Positives = 30/66 (45%)
Frame = +3
Query: 297 SRSAIHLSARRRSSHQRLGSRTSRHVCR*ET*TDHPFFLGLRQSRSRQCDPTSRHSSLRS 476
SRS+ LS+RRRS H+R R + + SRSR R S RS
Sbjct: 279 SRSS-SLSSRRRSKHKRKSKRDRSRSRDRSSSKSKSLRRSKKYSRSRSRSSERRRRS-RS 336
Query: 477 RTNQHR 494
R+ +HR
Sbjct: 337 RSTEHR 342
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 27.9 bits (59), Expect = 5.1
Identities = 24/62 (38%), Positives = 33/62 (53%)
Frame = +3
Query: 300 RSAIHLSARRRSSHQRLGSRTSRHVCR*ET*TDHPFFLGLRQSRSRQCDPTSRHSSLRSR 479
RS H S R RS H+R SR++ R +D F R+SRSR + + HS RSR
Sbjct: 256 RSRYHRS-RSRSRHRR--SRSNSPSMRK---SDRKFKKSQRKSRSRSRNRSRSHSRKRSR 309
Query: 480 TN 485
++
Sbjct: 310 SS 311
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 27.9 bits (59), Expect = 5.1
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 321 ARRRSSHQRLGSRTSRHVCR*ET*TDHPFFLGLRQSRSRQCDPTSRHSSLRSRTN-QHR 494
+R RS +R SR+ R R + + H +SRSR P RHS RS T+ +HR
Sbjct: 226 SRSRSPRRRRRSRSPRRRRRSRSPSPHH---RSHRSRSRSRSPRRRHSRSRSPTHRRHR 281
>SB_24438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +3
Query: 300 RSAIHLSARRRSS-HQRLGSRTSRHVCR*ET*TDHPFFLGLRQSRSRQCDPTSRHSSLRS 476
+++ H S+R ++S H+R +TSRH + H R TSRH R
Sbjct: 40 KTSRHESSRHKTSRHERSRHKTSRHETSRHERSRHETRQHERSRHKTSRHETSRHEKSRH 99
Query: 477 RTNQH 491
++H
Sbjct: 100 ERSRH 104
>SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 27.5 bits (58), Expect = 6.8
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +3
Query: 318 SARRRSSHQRLGSRTSRH-VCR*ET*TDHPFFLGLRQSRSRQCDPTSRHSSLRSRTNQH 491
S S H+ TSRH R ET + H + R TSRH S R +T++H
Sbjct: 37 SRHETSRHESSPHETSRHETSRHET-SRHERSRHETRQHERSRHKTSRHESSRHKTSRH 94
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,497,244
Number of Sequences: 59808
Number of extensions: 325834
Number of successful extensions: 917
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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