Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F01
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    26   3.7  
SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces ...    25   4.8  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    25   6.4  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    25   8.4  
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S...    25   8.4  

>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/51 (23%), Positives = 26/51 (50%)
 Frame = +3

Query: 36  EYFIEHLSQNISSLKIQIALHTLYILKSLYLFNYNLFGKFMKKTCLLILTI 188
           E  I+   +++S L I   LH  YI +   +  +++   +    C+LI+++
Sbjct: 312 ENLIDLELKSVSQLLIDEVLHPFYIFQVFSIILWSMDSYYYYAICILIISV 362


>SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 246

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 334 ILFIGDSVTGRLPSGKLLSGSFPTG 408
           IL IG S +G+L   K L+GS P G
Sbjct: 4   ILVIGRSNSGKLDFIKALTGSLPKG 28


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 361 GRLPSGKLLSGSFPTGRMLFGKFLTGK 441
           G+LP G LL+G   TG+ +  + + G+
Sbjct: 297 GKLPRGVLLTGPPGTGKTMLARAVAGE 323


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +3

Query: 228 INRDAEKVSTCCPS-SLLYNPRRLSCSTTK 314
           IN +  ++   C S S  YNP+ L C+T K
Sbjct: 662 INDELSQIKEACHSLSPKYNPKILVCTTQK 691


>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 319 LGSNGILFIGDSVTGRLPS 375
           +GS+G+L I D+ TGR+ S
Sbjct: 77  VGSDGVLKIADTSTGRVSS 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,788,684
Number of Sequences: 5004
Number of extensions: 34495
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)