Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_F01
(502 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.008
SB_45572| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.08) 32 0.31
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53
SB_29231| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_51502| Best HMM Match : TPR_2 (HMM E-Value=0) 30 1.2
SB_5760| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_50373| Best HMM Match : HC2 (HMM E-Value=0.001) 29 2.8
SB_35704| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_12320| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 37.1 bits (82), Expect = 0.008
Identities = 20/47 (42%), Positives = 29/47 (61%)
Frame = +1
Query: 310 PSRLGSNGILFIGDSVTGRLPSGKLLSGSFPTGRMLFGKFLTGKMLS 450
PSR +G L G +GRLPS +L SG P+GR+ G+ +G++ S
Sbjct: 311 PSRRLPSGRLPSGRLPSGRLPSRRLPSGQLPSGRLPSGRLPSGRLPS 357
Score = 34.3 bits (75), Expect = 0.057
Identities = 21/45 (46%), Positives = 27/45 (60%)
Frame = +1
Query: 304 LPPSRLGSNGILFIGDSVTGRLPSGKLLSGSFPTGRMLFGKFLTG 438
LP RL S G L G + RLPSG+L SG P+GR+ G+ +G
Sbjct: 315 LPSGRLPS-GRLPSGRLPSRRLPSGQLPSGRLPSGRLPSGRLPSG 358
Score = 33.5 bits (73), Expect = 0.10
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +1
Query: 310 PSRLGSNGILFIGDSVTGRLPSGKLLSGSFPTGRMLFGKFLTGKMLS 450
PSR +G L +GRLPSG+L SG P+ R+ G+ +G++ S
Sbjct: 281 PSRRLPSGRLPSRRLPSGRLPSGRLPSGRLPSRRLPSGRLPSGRLPS 327
Score = 33.5 bits (73), Expect = 0.10
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +1
Query: 310 PSRLGSNGILFIGDSVTGRLPSGKLLSGSFPTGRMLFGKFLTGKMLS 450
PSR +G L G +GRLPS +L SG P+GR+ G+ + ++ S
Sbjct: 291 PSRRLPSGRLPSGRLPSGRLPSRRLPSGRLPSGRLPSGRLPSRRLPS 337
Score = 33.1 bits (72), Expect = 0.13
Identities = 21/49 (42%), Positives = 29/49 (59%)
Frame = +1
Query: 304 LPPSRLGSNGILFIGDSVTGRLPSGKLLSGSFPTGRMLFGKFLTGKMLS 450
LP RL S G L G + RLPSG+L SG P+GR+ + +G++ S
Sbjct: 295 LPSGRLPS-GRLPSGRLPSRRLPSGRLPSGRLPSGRLPSRRLPSGQLPS 342
Score = 32.7 bits (71), Expect = 0.17
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +1
Query: 310 PSRLGSNGILFIGDSVTGRLPSGKLLSGSFPTGRMLFGKFLTGKMLS 450
PSR +G L G +GRLPSG+L SG P+ R+ + +G++ S
Sbjct: 331 PSRRLPSGQLPSGRLPSGRLPSGRLPSGWLPSRRLPSRRLPSGRLPS 377
Score = 31.1 bits (67), Expect = 0.53
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +1
Query: 310 PSRLGSNGILFIGDSVTGRLPSGKLLSGSFPTGRMLFGKFLTGKMLS 450
PSR +G L +GRLPSG+L S P+GR+ + +G++ S
Sbjct: 246 PSRRLPSGCLPSRRLPSGRLPSGRLPSRRLPSGRLPSRRLPSGRLPS 292
Score = 31.1 bits (67), Expect = 0.53
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +1
Query: 310 PSRLGSNGILFIGDSVTGRLPSGKLLSGSFPTGRMLFGKFLTGKM 444
PSR +G L +G LPSG+L SG P+ R+ G+ +G++
Sbjct: 396 PSRRLPSGRLPSRQLPSGPLPSGRLPSGCLPSRRLPSGRLPSGRL 440
Score = 30.3 bits (65), Expect = 0.93
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +1
Query: 310 PSRLGSNGILFIGDSVTGRLPSGKLLSGSFPTGRMLFGKFLTGKMLS 450
PSR +G L G + RLPS +L SG P+ R+ G+ +G++ S
Sbjct: 24 PSRRLPSGRLPSGRLPSRRLPSRRLPSGRLPSRRLPSGRLPSGRLPS 70
Score = 30.3 bits (65), Expect = 0.93
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +1
Query: 310 PSRLGSNGILFIGDSVTGRLPSGKLLSGSFPTGRMLFGKFLTGKMLS 450
PSR +G L G + RLPSG+L S P+GR+ + +G++ S
Sbjct: 256 PSRRLPSGRLPSGRLPSRRLPSGRLPSRRLPSGRLPSRRLPSGRLPS 302
Score = 30.3 bits (65), Expect = 0.93
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +1
Query: 310 PSRLGSNGILFIGDSVTGRLPSGKLLSGSFPTGRMLFGKFLTGKMLS 450
PSR +G L +GRLPS +L SG P+GR+ G+ + ++ S
Sbjct: 271 PSRRLPSGRLPSRRLPSGRLPSRRLPSGRLPSGRLPSGRLPSRRLPS 317
Score = 30.3 bits (65), Expect = 0.93
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = +1
Query: 304 LPPSRLGSNGILFIGDSVTGRLPSGKLLSGSFPTGRMLFGKFLTGKMLS 450
LP RL S L G + RLPSG+L S FP+GR+ + +G++ S
Sbjct: 360 LPSRRLPSRR-LPSGRLPSRRLPSGRLPSRRFPSGRLPSRRLPSGRLPS 407
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +1
Query: 310 PSRLGSNGILFIGDSVTGRLPSGKLLSGSFPTGRMLFG 423
PSR +G L +GRLPSG+L SG P+ R+ G
Sbjct: 94 PSRRLPSGRLPSRRLPSGRLPSGRLPSGQLPSRRLPSG 131
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +1
Query: 364 RLPSGKLLSGSFPTGRMLFGKFLTGKMLS 450
RLPSG+L S P+GR+ G+ +G++ S
Sbjct: 97 RLPSGRLPSRRLPSGRLPSGRLPSGQLPS 125
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +1
Query: 310 PSRLGSNGILFIGDSVTGRLPSGKLLSGSFPTGRMLFG 423
PSR +G L +GRLPS +L SG P+GR+ G
Sbjct: 386 PSRRFPSGRLPSRRLPSGRLPSRQLPSGPLPSGRLPSG 423
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +1
Query: 358 TGRLPSGKLLSGSFPTGRMLFGKFLTGKMLS 450
+GRLPS +L SG P+GR+ G+ + ++ S
Sbjct: 100 SGRLPSRRLPSGRLPSGRLPSGQLPSRRLPS 130
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +1
Query: 310 PSRLGSNGILFIGDSVTGRLPSGKLLSGSFPTGRMLFGKFLTGKMLS 450
PSR +G L G +G+LPS +L SG P+ R+ G+ + ++ S
Sbjct: 104 PSRRLPSGRLPSGRLPSGQLPSRRLPSGCLPSRRLPSGRLPSRRLPS 150
Score = 27.9 bits (59), Expect = 5.0
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +1
Query: 304 LPPSRLGSNGILFIGDSVTGRLPSGKLLSGSFPTGRMLFGKFLTGKMLS 450
LP RL S L G + RLPSG+L SG P+ R+ + +G++ S
Sbjct: 8 LPSRRLPSRR-LPSGRLPSRRLPSGRLPSGRLPSRRLPSRRLPSGRLPS 55
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +1
Query: 304 LPPSRLGSNGILFIGDSVTGRLPSGKLLSGSFPTGRM 414
LP RL S L G + RLPSG+L SG P+G++
Sbjct: 88 LPSRRLPSRR-LPSGRLPSRRLPSGRLPSGRLPSGQL 123
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1
Query: 310 PSRLGSNGILFIGDSVTGRLPSGKLLSGSFPTGRMLFGKFLTGKMLS 450
PSR +G L +GRLPS +L SG P+ R+ G+ + ++ S
Sbjct: 124 PSRRLPSGCLPSRRLPSGRLPSRRLPSGCLPSRRLPSGRLPSRRLPS 170
Score = 27.5 bits (58), Expect = 6.6
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 358 TGRLPSGKLLSGSFPTGRM 414
+GRLPS +L SG P+GR+
Sbjct: 222 SGRLPSRRLPSGRLPSGRL 240
Score = 27.5 bits (58), Expect = 6.6
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = +1
Query: 304 LPPSRLGSNGILFIGDSVTGRLPSGKLLSGSFPTGRMLFGKFLTGKMLST*F 459
LP RL S G L G +G LPS +L S P+GR+ + +G++ S F
Sbjct: 340 LPSGRLPS-GRLPSGRLPSGWLPSRRLPSRRLPSGRLPSRRLPSGRLPSRRF 390
Score = 27.5 bits (58), Expect = 6.6
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1
Query: 310 PSRLGSNGILFIGDSVTGRLPSGKLLSGSFPTGRMLFGKFLTGKMLS 450
PSR +G L +GRLPS +L SG P+ ++ G +G++ S
Sbjct: 376 PSRRLPSGRLPSRRFPSGRLPSRRLPSGRLPSRQLPSGPLPSGRLPS 422
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1
Query: 310 PSRLGSNGILFIGDSVTGRLPSGKLLSGSFPTGRMLFGKFLTGKMLS 450
PSR +G L +GRLPSG+L S P+ R+ G+ + ++ S
Sbjct: 14 PSRRLPSGRLPSRRLPSGRLPSGRLPSRRLPSRRLPSGRLPSRRLPS 60
Score = 27.1 bits (57), Expect = 8.7
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +1
Query: 304 LPPSRLGSNGILFIGDSVTGRLPSGKLLSGSFPTGRMLFGKFLTGKMLS 450
LP RL S G L + RLPSG+L S P+GR+ G+ + ++ S
Sbjct: 28 LPSGRLPS-GRLPSRRLPSRRLPSGRLPSRRLPSGRLPSGRLPSRRLPS 75
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1
Query: 310 PSRLGSNGILFIGDSVTGRLPSGKLLSGSFPTGRMLFGKFLTGKMLS 450
PSR +G L G + LPS +L SG P+ R+ G+ +G++ S
Sbjct: 226 PSRRLPSGRLPSGRLPSRWLPSRRLPSGCLPSRRLPSGRLPSGRLPS 272
>SB_45572| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.08)
Length = 813
Score = 31.9 bits (69), Expect = 0.31
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 331 GILFIGDSVTGRLPSGKLLSGSFPTGRMLFGKFLTGKMLS 450
G IG V G P G+L++G + GR++ G + G++++
Sbjct: 460 GYYRIGRLVVGDYPIGRLVAGDYRNGRLVAGDYRIGRLVA 499
Score = 30.3 bits (65), Expect = 0.93
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +1
Query: 259 VVLLVCCITLGG*VVLPPSRLGSN--GILFIGDSVTGRLPSGKLLSGSFPTGRMLFGKFL 432
+++LV G +V+ R+G G IG V G G+L+ G + GR++ G +
Sbjct: 234 IIVLVVGDYRNGRLVVGDYRIGRLVVGDYRIGRLVVGNYRIGRLVVGDYRIGRLVVGDYR 293
Query: 433 TGKML 447
TG+++
Sbjct: 294 TGRLV 298
Score = 30.3 bits (65), Expect = 0.93
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 343 IGDSVTGRLPSGKLLSGSFPTGRMLFGKFLTGKMLS 450
IG V G G+L+ G +P GR++ G + G++++
Sbjct: 454 IGRLVVGYYRIGRLVVGDYPIGRLVAGDYRNGRLVA 489
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 343 IGDSVTGRLPSGKLLSGSFPTGRMLFGKFLTGKML 447
IG V G SG+L+ G + GR++ G + +G+++
Sbjct: 314 IGRLVVGNYRSGRLVVGDYRIGRLVVGYYRSGRLV 348
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Frame = +1
Query: 331 GILFIGDSVTGRLPSG-----KLLSGSFPTGRMLFGKFLTGKML 447
G L +GD TGRL G +L+ G + GR++ G + +G+++
Sbjct: 285 GRLVVGDYRTGRLVVGYYRIGRLVVGDYRIGRLVVGNYRSGRLV 328
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 343 IGDSVTGRLPSGKLLSGSFPTGRMLFGKFLTGKML 447
IG V G SG+L+ G + GR++ G + G+++
Sbjct: 334 IGRLVVGYYRSGRLVVGDYRIGRLVVGDYRIGRLV 368
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 343 IGDSVTGRLPSGKLLSGSFPTGRMLFGKFLTGKML 447
IG V G G+L+ G + TGR++ G + G+++
Sbjct: 274 IGRLVVGDYRIGRLVVGDYRTGRLVVGYYRIGRLV 308
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 343 IGDSVTGRLPSGKLLSGSFPTGRMLFGKFLTGKML 447
IG V G +G+L++G + GR++ G + G+++
Sbjct: 474 IGRLVAGDYRNGRLVAGDYRIGRLVAGDYRIGRLV 508
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 331 GILFIGDSVTGRLPSGKLLSGSFPTGRMLFGKFLTGKML 447
G IG V G G+L+ G++ +GR++ G + G+++
Sbjct: 300 GYYRIGRLVVGDYRIGRLVVGNYRSGRLVVGDYRIGRLV 338
>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2848
Score = 31.1 bits (67), Expect = 0.53
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 292 G*VVLPPSRLGSNGILFIGDSVTGRLPSGKLLSGS 396
G LP + + NG+ + TGRLPSG+ L+GS
Sbjct: 186 GLATLPLAHVYRNGVADLSLPTTGRLPSGESLNGS 220
>SB_29231| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2271
Score = 29.9 bits (64), Expect = 1.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 351 FSDWQIAKWQIVKRFISNW*NVIW 422
FSDW + +W ++R SN ++ W
Sbjct: 278 FSDWGVVEWDAIRRVWSNLPDIFW 301
>SB_51502| Best HMM Match : TPR_2 (HMM E-Value=0)
Length = 1161
Score = 29.9 bits (64), Expect = 1.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 351 FSDWQIAKWQIVKRFISNW*NVIW 422
FSDW + +W ++R SN ++ W
Sbjct: 46 FSDWGVVEWDAIRRVWSNLSDIFW 69
>SB_5760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 29.9 bits (64), Expect = 1.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 351 FSDWQIAKWQIVKRFISNW*NVIW 422
FSDW + +W ++R SN ++ W
Sbjct: 86 FSDWGVVEWDAIRRVWSNLPDIFW 109
>SB_50373| Best HMM Match : HC2 (HMM E-Value=0.001)
Length = 382
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 346 GDSVTGRLPSGKLLSGSFPTGRMLFGKFLTGK 441
G VTG+ +GK ++G G+ + GK +TGK
Sbjct: 78 GKGVTGKGVAGKEMTGKGVAGKEMTGKEMTGK 109
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 322 GSNGILFIGDSVTGRLPSGKLLSGSFPTGRMLFGKFLTGK 441
G G G V G+ +GK ++G TG+ + GK +TGK
Sbjct: 55 GVAGKEMTGKGVAGKGVAGKGVAGKGVTGKGVAGKEMTGK 94
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 346 GDSVTGRLPSGKLLSGSFPTGRMLFGKFLTGKMLS 450
G V G+ +GK ++G TG+ + GK +TGK ++
Sbjct: 73 GKGVAGKGVTGKGVAGKEMTGKGVAGKEMTGKEMT 107
>SB_35704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 256
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 361 GRLPSGKLLSGSFPTGRMLFGKFLTGK 441
G+LP+G LL GS TG+ L K + G+
Sbjct: 161 GKLPTGVLLIGSPGTGKTLLAKAVAGE 187
>SB_12320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 334 ILFIGDSVTGRLPSGKLLSGSFPTGRMLFGKFLTGK 441
+LF G TGR +G+ +G TGR G+ TG+
Sbjct: 30 LLFTGREFTGREFTGREFTGREFTGRDFTGREFTGR 65
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,502,219
Number of Sequences: 59808
Number of extensions: 241115
Number of successful extensions: 736
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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