Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F01
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70756-11|CAA94793.2|  368|Caenorhabditis elegans Hypothetical p...    28   3.3  
Z74475-6|CAA98961.1|  299|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z29117-9|CAA82381.1|  182|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AL023811-2|CAA19423.1|  299|Caenorhabditis elegans Hypothetical ...    28   4.4  
AF025457-7|AAB70967.1|  431|Caenorhabditis elegans Hypothetical ...    28   4.4  
U61944-4|AAB03120.1|  891|Caenorhabditis elegans Hypothetical pr...    27   5.8  

>Z70756-11|CAA94793.2|  368|Caenorhabditis elegans Hypothetical
           protein T06E4.7 protein.
          Length = 368

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 66  ISSLKIQIALHTLYILKSLYLFNYNLFGKFMKKTCLLILTIGTF 197
           IS L   ++    +  +S+ L N N+FG++  K  LLI  +  F
Sbjct: 95  ISYLYAILSFPLFFFYRSMILANSNMFGQYFTKNTLLITFVVIF 138


>Z74475-6|CAA98961.1|  299|Caenorhabditis elegans Hypothetical
           protein C51F7.2 protein.
          Length = 299

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 81  IQIALHTLYILKSL-YLFNYNLFGKFMKKTCLLILTIGTF 197
           +Q AL TL  L  L  LF YN+F    KK   L + +  F
Sbjct: 100 VQYALTTLVSLNRLTVLFKYNIFEPIWKKITWLFILVAYF 139


>Z29117-9|CAA82381.1|  182|Caenorhabditis elegans Hypothetical
           protein C48B4.9 protein.
          Length = 182

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 102 LYILKSLYLFNYNLFGKFMKKTCLLILTIGTF 197
           L+  KS+Y F YN  G  + +T ++ L++ +F
Sbjct: 34  LFQFKSIYDFEYNFVGDLVFRTFVIFLSLTSF 65


>AL023811-2|CAA19423.1|  299|Caenorhabditis elegans Hypothetical
           protein C51F7.2 protein.
          Length = 299

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 81  IQIALHTLYILKSL-YLFNYNLFGKFMKKTCLLILTIGTF 197
           +Q AL TL  L  L  LF YN+F    KK   L + +  F
Sbjct: 100 VQYALTTLVSLNRLTVLFKYNIFEPIWKKITWLFILVAYF 139


>AF025457-7|AAB70967.1|  431|Caenorhabditis elegans Hypothetical
           protein C08E3.8 protein.
          Length = 431

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 57  SQNISSLKIQIALHTLYILKSLYLFNYN 140
           S +  S ++  AL  LYI KS Y F YN
Sbjct: 361 SPDNGSFEVHCALRVLYITKSGYKFKYN 388


>U61944-4|AAB03120.1|  891|Caenorhabditis elegans Hypothetical
           protein T12E12.2 protein.
          Length = 891

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 333 YIVHWRFSDWQIAKWQ 380
           Y+VHWR  DW+   W+
Sbjct: 51  YLVHWRGYDWKERTWE 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,732,848
Number of Sequences: 27780
Number of extensions: 191007
Number of successful extensions: 386
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)