Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_E23
(673 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39480.1 68418.m04781 F-box family protein contains Pfam:PF00... 30 1.2
At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00... 30 1.6
At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly... 29 2.8
At5g40200.1 68418.m04878 DegP protease, putative contains simila... 29 3.7
At4g22320.1 68417.m03227 expressed protein 28 6.5
At4g01440.1 68417.m00185 nodulin MtN21 family protein similar to... 28 6.5
At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase fa... 28 6.5
At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative (CH... 27 8.6
At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative (CH... 27 8.6
>At5g39480.1 68418.m04781 F-box family protein contains Pfam:PF00646
F-box domain ; similar to SKP1 interacting partner 2
(SKIP2) TIGR_Ath1:At5g67250
Length = 568
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 546 LRFIALKCKTVFFTMQRLLLMELSKRKSSMCITPTIPALSFT 671
L F+ + K V T+QRL L E+ K+ C+ P P+ +FT
Sbjct: 507 LAFVWKETKVVI-TLQRLNLTEILKKGLGSCVPPLPPSKNFT 547
>At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00646
F-box domain ; similar to SKP1 interacting partner 2
(SKIP2) TIGR_Ath1:At5g67250
Length = 571
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 585 TMQRLLLMELSKRKSSMCITPTIPALSFT 671
T+QR+ L E+ K+ C++P +P +FT
Sbjct: 522 TLQRINLGEILKKSLGSCVSPLLPTKNFT 550
>At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly
identical to GI:9957293; contains Pfam profile: PF01397
terpene synthase family
Length = 591
Score = 29.1 bits (62), Expect = 2.8
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 2/108 (1%)
Frame = +2
Query: 122 ERQKKVLSLFQD--VDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRIGYLPK 295
E+ +K+L+ Q +DQ+ D+ K+G Y EA IDN ++ +
Sbjct: 82 EKVRKMLNDEQKTYLDQLEFIDDLQKLGVSYHFEAEIDNILTSSYKKDRTNIQESDLHAT 141
Query: 296 YYEFSIFYQKLREEAIALFHLFYYAKDFETFYKSAAFARVHLNEGQFL 439
EF +F Q + +F +F ++ F + + + L E +L
Sbjct: 142 ALEFRLFRQHGFNVSEDVFDVF--MENCGKFDRDDIYGLISLYEASYL 187
>At5g40200.1 68418.m04878 DegP protease, putative contains
similarity to DegP2 protease GI:13172275 from
[Arabidopsis thaliana]
Length = 592
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 170 NVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRI 280
N +DEY K DYD +D T K+A + L + I
Sbjct: 542 NCEDEYMKFNLDYDQIVVLDTKTAKEATLDILTTHCI 578
>At4g22320.1 68417.m03227 expressed protein
Length = 238
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +2
Query: 98 KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEE 259
K V +E QKK ++ ++ D++ DD KI +D VE D K VEE
Sbjct: 115 KYVPIAVLEEQKKEITEIEEDDKIEEDD---KIDEDNKVEQE-DKVDEDKTVEE 164
>At4g01440.1 68417.m00185 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 365
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = +2
Query: 47 ALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIG 199
++V S VV Y F V + E +KK+ F + DQ DDE YK G
Sbjct: 306 SVVGSGVVIFGLYIFLLGKVRLMKEECEKKLPCRFNEDDQEEDDDEQYKKG 356
>At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
sapiens [SP|Q9Y2Q0, SP|O43520]; contains InterPro
accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 1228
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = -1
Query: 409 SESGTLVEG-FKVFSIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQFQ 263
S SG ++E +KV +++E K + + E+G++++L K DS+ F+
Sbjct: 595 SGSGQIIEREYKVLNLLEFTSKRKRMTVIVRDEEGQILLLCKGADSIIFE 644
>At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative
(CHX18) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 742
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 304 LIVLGKITDSVQFQEFFNSFLIGVVI 227
++V G ITD++ F +F++GV+I
Sbjct: 204 VLVCGFITDAIGIHSMFGAFVVGVLI 229
>At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative
(CHX18) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 810
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 304 LIVLGKITDSVQFQEFFNSFLIGVVI 227
++V G ITD++ F +F++GV+I
Sbjct: 272 VLVCGFITDAIGIHSMFGAFVVGVLI 297
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,154,972
Number of Sequences: 28952
Number of extensions: 284073
Number of successful extensions: 758
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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