Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_E22
(239 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 1.0
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc... 25 1.3
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 25 1.3
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 24 2.3
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 24 3.1
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f... 24 3.1
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 23 4.1
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces... 23 4.1
SPAC6G10.03c |||abhydrolase family protein, unknown biological r... 23 4.1
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 23 5.4
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 23 7.1
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 23 7.1
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 23 7.1
SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces ... 22 9.4
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch... 22 9.4
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 22 9.4
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc... 22 9.4
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 22 9.4
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 22 9.4
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 22 9.4
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 22 9.4
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3... 22 9.4
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 1.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 96 DFSYAYETENGISGQAQGKVKSLGKDEIALE 188
D +Y YET + ++GK + K E ALE
Sbjct: 176 DLTYDYETLKANADDSEGKQTLVSKREAALE 206
>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.0 bits (52), Expect = 1.3
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 224 TFGRFVLAGPRNFESYFILAKRFYFSLGLATDAILCLVCIAKITFWT 84
T G ++ G + F + YFS+ + I C C A+ITF T
Sbjct: 50 TCGEYIYKG-KKFNARKEKTGEKYFSIDILRFYIRCTRCAAEITFIT 95
>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 920
Score = 25.0 bits (52), Expect = 1.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 87 PEGDFSYAYETENGISGQAQGKVKSLG 167
P D S +YE NG Q+ V SLG
Sbjct: 540 PSQDKSTSYEVPNGTENQSPRPVTSLG 566
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 24.2 bits (50), Expect = 2.3
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +3
Query: 114 ETENGISGQAQGKVKSLGKDEIALEVSGSSQYKSPEGEVVSL 239
E ISG+ VKS + S KSP GE VS+
Sbjct: 739 ENNTSISGRVSKLVKSFNDSSSISNNTKISITKSPSGEKVSV 780
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 156 KSLGKDEIALEVSGSSQYKSPEGE 227
KS K+E + +V G S Y PE E
Sbjct: 381 KSSAKEEESDKVKGESVYPKPESE 404
>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
factor complex subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 23.8 bits (49), Expect = 3.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 3 IIAFCIIGYVYATSDEEAKVLRSDYSQSPE 92
++ CIIGYV+ + ++ K + S PE
Sbjct: 411 VVDSCIIGYVFVSDVDDVKNRMTLLSPVPE 440
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 23.4 bits (48), Expect = 4.1
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = +2
Query: 116 DREWHQWP 139
D +WHQWP
Sbjct: 283 DPDWHQWP 290
>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 129
Score = 23.4 bits (48), Expect = 4.1
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 227 LTFGRFVLAGPRNFESYFILAKRFYFSLGLATDAILCLVCIAKITFW 87
L FG F++AG S+F+ R S+ + +L L I F+
Sbjct: 41 LVFGFFMIAGFSKSVSFFLRKDRMLGSISFFSGLLLTLFHFPIIGFF 87
>SPAC6G10.03c |||abhydrolase family protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 428
Score = 23.4 bits (48), Expect = 4.1
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 202 LDPET-SRAISSLPRDFTFPWAWPLMPFSV 116
L+P S+ + LPR TF W + PFS+
Sbjct: 256 LEPSRPSKPKNPLPRFITFLWEQNVTPFSL 285
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 23.0 bits (47), Expect = 5.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 110 IRDREWHQWPGPRKSKI 160
+R +EW+ W P SKI
Sbjct: 189 MRMKEWYSWHFPELSKI 205
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 22.6 bits (46), Expect = 7.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 165 GKDEIALEVSGSSQYKSPEGEVVSL 239
GK+E+ALE S + + P +V L
Sbjct: 142 GKNEVALEFSTTDDKQIPSAQVDEL 166
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 22.6 bits (46), Expect = 7.1
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +3
Query: 51 EAKVLRSDYSQSPEGDFSYAYETENGISGQAQGKV 155
+A L SD + +GD +Y + + +SG + +V
Sbjct: 681 KACCLDSDLNSMNDGDLTYIHSNGSSLSGGQKQRV 715
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 22.6 bits (46), Expect = 7.1
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +3
Query: 48 EEAKVLRSDYSQ-SPEGDFSYAYETENGISGQAQGK 152
E K++ + Q + + DFS A TENG A K
Sbjct: 565 EGNKLVAEQFKQYATKNDFSSAATTENGYIAVASNK 600
>SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 307
Score = 22.2 bits (45), Expect = 9.4
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -2
Query: 223 PSGDLYWLDPETS-RAISSLPRDFTFPWAWPLMPFSVSYA*LK 98
P DL W DP+ S + S PR F + ++ + Y +K
Sbjct: 188 PMADLVWSDPDPSVQEFSLSPRGAGFSFGEVIVTKFLEYNNMK 230
>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
2|||Manual
Length = 257
Score = 22.2 bits (45), Expect = 9.4
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = -2
Query: 226 SPSGDLYWLDPE 191
+P+ D YW+DP+
Sbjct: 176 NPNTDEYWIDPD 187
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 165 GKDEIALEVSGSSQYKSPEGEVV 233
G+DE AL + + SPE E++
Sbjct: 210 GRDEEALRIMCNMAELSPESEII 232
>SPAC12G12.10 |||WD repeat protein, human WDR21
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 420
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 146 LGLATDAILCLVCIAKITFWT 84
+GL+ + I LVC A FW+
Sbjct: 161 IGLSNNPISSLVCNAMQIFWS 181
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 22.2 bits (45), Expect = 9.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 193 ETSRAISSLPRDFTFPWAWPLMPFSVS 113
E+ +S +P + PL+PFSVS
Sbjct: 831 ESLEPLSCIPSSSLTNFTQPLVPFSVS 857
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +3
Query: 42 SDEEAKVLRSDYSQSPEGDFSYA 110
S + ++DY SP DFS++
Sbjct: 106 SQSSSATHQNDYISSPHADFSFS 128
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -1
Query: 191 NFESYFILAKRFYFSLGLATDAILC 117
N +SY + KRF +G + A+ C
Sbjct: 185 NNKSYLLKKKRFLKEVGNSPSAVYC 209
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -1
Query: 56 SFFITGGINVADNTE 12
SFF + G+N++ NTE
Sbjct: 139 SFFGSAGLNLSSNTE 153
>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 555
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 180 LFHPCQEILLFLGPG 136
LF+P +EIL +GPG
Sbjct: 380 LFYPQREILPAVGPG 394
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,016,758
Number of Sequences: 5004
Number of extensions: 18183
Number of successful extensions: 74
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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