Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_E22
(239 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0970 + 26424209-26424910,26425053-26425109,26425251-264254... 29 0.40
03_02_0415 - 8263459-8263611,8263788-8263919,8264841-8264936,826... 29 0.69
05_07_0337 - 29368823-29368863,29369011-29369104,29369231-293693... 28 0.92
03_02_0114 + 5704002-5704037,5704547-5704666,5705040-5705076,570... 28 1.2
07_01_0166 + 1164903-1165144,1165839-1166074,1166719-1166781,116... 27 2.8
08_01_0917 + 9033451-9036136,9036373-9036722 26 3.7
11_04_0033 + 12567208-12567642 25 6.5
06_03_1137 + 27903012-27904196,27904330-27904542,27905775-279058... 25 6.5
06_01_1098 - 9017236-9018660 25 8.5
04_01_0249 - 3284107-3286377 25 8.5
01_06_0895 - 32804433-32804744,32804948-32805163,32805301-328056... 25 8.5
>06_03_0970 +
26424209-26424910,26425053-26425109,26425251-26425478,
26425788-26425881,26425955-26426161,26426581-26426711,
26426943-26426992,26427125-26427432,26427548-26427651,
26427810-26428526,26429159-26429338,26429703-26429831
Length = 968
Score = 29.5 bits (63), Expect = 0.40
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 72 DYSQSPEGDFSYAYETEN-GISGQAQGKVKSLGKDEIALEVSGSSQYKS 215
+Y PE + + + EN G Q Q K++ LGKD+ ALE + Q S
Sbjct: 4 EYLAEPEDEVAISMWPENIGDKHQKQFKMEKLGKDQDALEDANFQQKPS 52
>03_02_0415 -
8263459-8263611,8263788-8263919,8264841-8264936,
8265021-8265137,8265352-8265435,8265517-8265577,
8266217-8266266,8266544-8266633,8267539-8267757,
8269207-8269262,8269469-8269546,8269707-8269811,
8269925-8270069,8270310-8270388,8270470-8270537,
8271550-8271626,8272676-8272712,8273107-8273232,
8273770-8273805
Length = 602
Score = 28.7 bits (61), Expect = 0.69
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = +3
Query: 48 EEAKVLRSDYSQSPEGDFSYAYETENGISGQAQGKVKSLGKDEIALEVSGSSQYKSPEGE 227
E+ Y++S +GDF Y T+N G + G+D I ++ +++ S E
Sbjct: 272 EDGSYSSDAYTESEDGDFDKEYSTDN--DGPEEDDSYDSGEDNIEEDMDDDTEHSSGGSE 329
>05_07_0337 -
29368823-29368863,29369011-29369104,29369231-29369347,
29369751-29369804,29369910-29370026,29370170-29370310,
29370402-29370820,29370906-29370934,29371287-29371354,
29371833-29371907
Length = 384
Score = 28.3 bits (60), Expect = 0.92
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 149 SLGLATDAILCLVCIAKITFWTL*IVAAKDFSFFITGGINVA 24
SLG AT + +V ++ I WT+ I DF+ TG + +A
Sbjct: 290 SLGSATQISMFVVPVSVIVAWTMGIPMDLDFNLLETGSLFLA 331
>03_02_0114 +
5704002-5704037,5704547-5704666,5705040-5705076,
5705905-5705981,5706642-5706755,5706902-5706969,
5707051-5707129,5707367-5707511,5707627-5707731,
5707917-5707994,5708192-5708247,5708533-5708651,
5708853-5709096,5709203-5709385,5709956-5710264,
5710350-5710399,5711042-5711102,5711184-5711267,
5711461-5711577,5711665-5711831,5711938-5712010,
5712497-5712581,5712693-5712886,5713073-5713228
Length = 918
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = +3
Query: 48 EEAKVLRSDYSQSPEGDFSYAYETENGISGQAQGKVKSLGKDEIALEVSGSSQYKSPEGE 227
E+ Y+ S +GD Y T+N + G G+D I ++ ++Y S E
Sbjct: 429 EDGSCSSDAYTDSEDGDVDKEYSTDNDVDGSYDS-----GEDNIEEDMEDDTEYSSGGSE 483
>07_01_0166 +
1164903-1165144,1165839-1166074,1166719-1166781,
1166808-1167017,1167098-1167263,1167537-1167780,
1167970-1168362
Length = 517
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 165 GKDEIALEVSGSSQYKSPEGEVVSL 239
GKD+ A G S+ +PEGE+ L
Sbjct: 353 GKDDNASAADGGSEKSAPEGEIEQL 377
>08_01_0917 + 9033451-9036136,9036373-9036722
Length = 1011
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 220 SGDLYWLDPETSRAISSLPRDFTFPWAWPLMPFSVSY 110
SG+L W+D ++ I ++P D W L ++SY
Sbjct: 372 SGELSWIDLSGNQLIGTIPADL---WKLKLTSLNLSY 405
>11_04_0033 + 12567208-12567642
Length = 144
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 51 EAKVLRSDY--SQSPEGDFSYAYETENGISGQAQGKVKSLGKD 173
+ KV+ +D S S +GD A + N + G G V+ LG+D
Sbjct: 77 KVKVVAADEVGSSSSQGDKGIADGSGNKVDGLQDGVVEDLGED 119
>06_03_1137 +
27903012-27904196,27904330-27904542,27905775-27905867,
27905940-27906008,27906412-27906612,27906688-27906834,
27907524-27907652,27909001-27909131,27909240-27909333
Length = 753
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +3
Query: 102 SYAYETENGISGQAQGKVKSLGKDEIALEVSGSSQYKSPEGE 227
SY Y+T N +S + + ++EI+L + + + EG+
Sbjct: 579 SYVYDTRNKLSERYRSFATDSEREEISLSLQQTEDWLYEEGD 620
>06_01_1098 - 9017236-9018660
Length = 474
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +3
Query: 66 RSDYSQSPE---GDFSYAYETENGISGQAQGKVKSLGKDEIALEVS 194
R DY+QS E + A E E+G G+ + G DE+ ++ S
Sbjct: 23 REDYAQSDEEVEANVEGASEEESGDDDSGSGEDEDEGSDEMNIDPS 68
>04_01_0249 - 3284107-3286377
Length = 756
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 36 ATSDEEAKVLRSDYSQSPEGDFSYAYETENGIS 134
A DEE + D S+ G S Y+T N +S
Sbjct: 600 ANEDEEGNYFQVDDSRPQSGFLSVLYDTSNVLS 632
>01_06_0895 -
32804433-32804744,32804948-32805163,32805301-32805642,
32805778-32806020,32806130-32806582,32806898-32807113,
32808360-32808432,32808750-32808790,32809027-32809118,
32809222-32809333,32810003-32810078,32810154-32810301,
32811195-32811336,32812120-32812196,32813568-32813619
Length = 864
Score = 25.0 bits (52), Expect = 8.5
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Frame = +3
Query: 15 CIIGYVYATSDEEAKVLRSDYSQSPEGDFSYAYETENGI---SGQAQGKVKSL-GKDEIA 182
CI GY DE +VLRS S G + + E G S +GKV G+ +
Sbjct: 773 CIYGYYNTCQDEGPRVLRSITLVSNRGKYG-PFGEEVGTYFSSATTEGKVVGFHGRSGLY 831
Query: 183 LEVSG 197
L+ G
Sbjct: 832 LDAIG 836
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,589,222
Number of Sequences: 37544
Number of extensions: 115183
Number of successful extensions: 355
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 14,793,348
effective HSP length: 58
effective length of database: 12,615,796
effective search space used: 264931716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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