Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E22
         (239 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45368| Best HMM Match : fn2 (HMM E-Value=3.1e-32)                   27   2.4  
SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.1  
SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_18129| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_35074| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    26   5.4  
SB_13109| Best HMM Match : Dynein_heavy (HMM E-Value=2.6e-09)          25   7.2  
SB_9674| Best HMM Match : Antimicrobial_1 (HMM E-Value=1.1)            25   9.5  

>SB_45368| Best HMM Match : fn2 (HMM E-Value=3.1e-32)
          Length = 1206

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = +2

Query: 122 EWH---QWPGPRKSKISWQG*NSSRSF 193
           +WH   + PG  K  I+W G NSSR F
Sbjct: 472 DWHKDAEIPGSGKFIIAWDGLNSSRRF 498


>SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1092

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +3

Query: 36  ATSDEEAKVLRSDYSQS-PEGDFSYAYETENGISGQAQ-GKVKSLGKDEIALEVSGSSQY 209
           ATSD  AK+L+ D+ Q+ P          EN +  Q++   + +   ++I   +S     
Sbjct: 555 ATSDRAAKILKPDHGQACPTTHLLVHGSQENTLPKQSENAPLNNDSAEKIEEPISSQGHR 614

Query: 210 KSPEGEVV 233
             PEG  V
Sbjct: 615 TVPEGASV 622


>SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1531

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 42  SDEEAKVLRSDYSQSPEGDFSYAYETEN 125
           S+E+ + LR + SQS + +FSY  +T +
Sbjct: 77  SEEKERQLRENLSQSQKDNFSYQSKTSS 104


>SB_18129| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 120 ENGISGQAQGKVKSLGKDEIALEVSGSSQYKSPEGEVVSL 239
           E+G+SG A  K  +L   ++ + +S  +Q +S + E  S+
Sbjct: 323 EDGVSGSAHDKEPALAGKDVCITLSPPAQEESLDEETRSM 362


>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 766

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +3

Query: 57  KVLRSDYSQSPEGDFSYAYETENGISGQAQGKVKSLGK-DE-IALEVSGSSQYKSP 218
           KVL S++ Q+    + + YET   I G  + + ++  K DE +   V G  +  SP
Sbjct: 479 KVLESEFCQAIREVYEHVYETVE-IQGSPELRAQATAKTDEGLGFNVMGGREQNSP 533


>SB_35074| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/48 (20%), Positives = 24/48 (50%)
 Frame = +3

Query: 39  TSDEEAKVLRSDYSQSPEGDFSYAYETENGISGQAQGKVKSLGKDEIA 182
           + ++E K+ R++ ++   G+          +SG  + K++    DE+A
Sbjct: 358 SGNQEPKIRRTNVNEQASGEVKVGLAWGRQVSGTQEPKIRRTNVDELA 405



 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +3

Query: 48  EEAKVLRSDYSQSPEGDFSYAYETENGISGQAQGKVKSLGKDEIA 182
           +E K+ R++  +   GD          +SG  + K++    DE+A
Sbjct: 392 QEPKIRRTNVDELASGDVKVGLAWGRQVSGTQEPKIRRTNVDELA 436


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 40   PVMKKLKSFAATIHRVQKVILAMHT 114
            PV ++ +    TI RVQ+V+   HT
Sbjct: 2245 PVWRRGRKLVTTIRRVQRVVTIRHT 2269


>SB_13109| Best HMM Match : Dynein_heavy (HMM E-Value=2.6e-09)
          Length = 1703

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 62   DFSFFITGGINVADNTESDD 3
            +F FF+TGGI + +  E+ D
Sbjct: 1429 EFMFFLTGGIGLENKLENPD 1448


>SB_9674| Best HMM Match : Antimicrobial_1 (HMM E-Value=1.1)
          Length = 288

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -3

Query: 174 HPCQEILLFLGPGH*CHSLSRMHS*NHLLDSVNS 73
           H CQ  L  +   H C S   + S NH    ++S
Sbjct: 79  HFCQSFLPIISANHFCQSFLPIISANHFFPDISS 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,428,913
Number of Sequences: 59808
Number of extensions: 129953
Number of successful extensions: 437
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 16,821,457
effective HSP length: 57
effective length of database: 13,412,401
effective search space used: 295072822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)