Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E22
         (239 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11680.1 68417.m01866 zinc finger (C3HC4-type RING finger) fa...    33   0.035
At1g70060.1 68414.m08061 paired amphipathic helix repeat-contain...    28   0.76 
At2g38340.1 68415.m04710 AP2 domain-containing transcription fac...    27   1.3  
At5g63050.1 68418.m07910 expressed protein                             26   3.0  
At3g59270.1 68416.m06607 syntaxin-related family protein contain...    26   3.0  
At2g03480.2 68415.m00308 dehydration-responsive protein-related ...    25   7.0  
At2g03480.1 68415.m00307 dehydration-responsive protein-related ...    25   7.0  
At2g03240.1 68415.m00277 EXS family protein / ERD1/XPR1/SYG1 fam...    25   7.0  
At1g55090.1 68414.m06292 carbon-nitrogen hydrolase family protei...    25   7.0  
At1g12760.1 68414.m01481 zinc finger (C3HC4-type RING finger) fa...    25   7.0  
At5g18750.1 68418.m02226 DNAJ heat shock N-terminal domain-conta...    25   9.3  
At4g14770.1 68417.m02272 tesmin/TSO1-like CXC domain-containing ...    25   9.3  
At3g09920.1 68416.m01183 phosphatidylinositol-4-phosphate 5-kina...    25   9.3  

>At4g11680.1 68417.m01866 zinc finger (C3HC4-type RING finger)
           family protein low similarity to SP|Q9WTV7 RING finger
           protein 12 (LIM domain interacting RING finger protein)
           {Mus musculus}; contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 390

 Score = 32.7 bits (71), Expect = 0.035
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +3

Query: 15  CIIGYVYATSDEEAKVLRSDYSQSPEGDFSYAYETENGISGQAQGKVKSLGKD 173
           CII  +YA +D+E    ++D  Q P+  F+     E  +SG+A+G +   G D
Sbjct: 274 CIIAILYAVADQEG-ASKNDIDQMPKFRFTKTGNVEK-LSGKARGIMTECGTD 324


>At1g70060.1 68414.m08061 paired amphipathic helix repeat-containing
            protein similar to transcription co-repressor Sin3
            [Xenopus laevis] GI:4960210; contains Pfam profile
            PF02671: Paired amphipathic helix repeat
          Length = 1362

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = +3

Query: 51   EAKVLRSDYSQSPEGDF---SYAYETENGISGQAQGKVKSLGKDEI-ALEVSGSSQYKSP 218
            EAKV R +   SP GDF   +YA   EN +   ++ K      D+  A   S  S   S 
Sbjct: 930  EAKVEREEGELSPTGDFEEDNYAVHGENDMEALSKSKENDATADDASAPRSSDGSGNTSH 989

Query: 219  EGEV 230
             G+V
Sbjct: 990  NGDV 993


>At2g38340.1 68415.m04710 AP2 domain-containing transcription
           factor, putative (DRE2B) Similar to DREB2A (GP:3738230)
           and DREB2B (GP:3738232) [Arabidopsis thaliana]; DRE
           binding proteins may be involved in dehydration or low
           temp response
          Length = 244

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 110 IRDREWHQWPGPRKSKISWQG*NSSRS 190
           +R R W +W    +  +S +G NSSRS
Sbjct: 73  VRQRVWGKWVAEIREPVSHRGANSSRS 99


>At5g63050.1 68418.m07910 expressed protein
          Length = 345

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 33  YATSDEEAKVLRSDYSQSPEGDFSYAYETENGISGQ 140
           Y + D+E  V  S  +Q+    FSY  ETE+ ++GQ
Sbjct: 100 YRSDDDENNVNGSPKAQNTS--FSYTSETEDSMTGQ 133


>At3g59270.1 68416.m06607 syntaxin-related family protein contains a
           novel domain similar to F-box that is shared among other
           proteins in Arabidopsis; similar to proteins At1g56610,
           At3g54160, At1g47920 (syntaxin SYP81), At5g41830,
           At3g44180,  At1g48390, At3g59270  [Arabidopsis thaliana]
          Length = 335

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = -2

Query: 238 RETTSPSGDLYWLDPETSRAISSLPRDFTFPWAWPL 131
           ++   P+  + W+     R +S L  D +  W WP+
Sbjct: 51  KDDVGPAPVIGWITNVLKRRVSELALDISSCWDWPM 86


>At2g03480.2 68415.m00308 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase;
           non-consensus GA donor site at exon 4
          Length = 595

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 193 ETSRAISSLPRDFTFPWAWPL 131
           E  R +   PRD+  P  WPL
Sbjct: 125 EKERCVVRPPRDYKIPLRWPL 145


>At2g03480.1 68415.m00307 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase;
           non-consensus GA donor site at exon 4
          Length = 606

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 193 ETSRAISSLPRDFTFPWAWPL 131
           E  R +   PRD+  P  WPL
Sbjct: 125 EKERCVVRPPRDYKIPLRWPL 145


>At2g03240.1 68415.m00277 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to  PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 823

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 48  EEAKVLRSDYSQSPEGDFSYAYETENGISGQAQGKVKSL 164
           +E    ++  S   E D     E +NG+SG+  G V+ +
Sbjct: 231 QEGGSSKAGKSSDEEDDDDAEKEEDNGVSGEVSGDVRKM 269


>At1g55090.1 68414.m06292 carbon-nitrogen hydrolase family protein
           low similarity to SP|P71911 Glutamine-dependent NAD(+)
           synthetase (EC 6.3.5.1) {Mycobacterium tuberculosis};
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 725

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 51  EAKVLRSDYSQSPEGDFSYAYE 116
           E + +RSDYSQ  E D    YE
Sbjct: 574 ELEPIRSDYSQLDEVDMGMTYE 595


>At1g12760.1 68414.m01481 zinc finger (C3HC4-type RING finger)
           family protein low similarity to SP|Q9NVW2 RING finger
           protein 12 (LIM domain interacting RING finger protein)
           {Homo sapiens}; contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 368

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +3

Query: 15  CIIGYVYATSDEEAKVLRSDYSQSPEGDFSYAYETENGISGQAQGKVKSL 164
           CII  +YA +D+E    + D  Q  +  F    +     + +AQG  + +
Sbjct: 244 CIIAVLYAVADQEG-ASKEDIEQLTKFKFRKLGDANKHTNDEAQGTTEGI 292


>At5g18750.1 68418.m02226 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 884

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -1

Query: 227 LTFGRFVLAGPRNFESYFILAKRFYFSLGLATDAI 123
           ++ G+F L G  N E     +   YF +G   D +
Sbjct: 472 ISIGKFKLGGNENIEKTPCFSHMIYFKVGSMKDTV 506


>At4g14770.1 68417.m02272 tesmin/TSO1-like CXC domain-containing
           protein similar to CXC domain containing TSO1-like
           protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427, CXC
           domain protein TSO1 [Arabidopsis thaliana] GI:7767425;
           contains Pfam profile PF03638: Tesmin/TSO1-like CXC
           domain
          Length = 658

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 51  EAKVLRSDYSQSPEGDFSYAYETENGISGQAQGKV-KSLGKDEIALEVSGSSQYKS 215
           E + ++ D ++ PE   +  YE  +G+  QA   + + + +  +  E+ G+ Q  S
Sbjct: 222 EKQTMQHDSNKEPESANAIPYEVNSGVISQAVSLLHRGIRRRCLDFEMPGNKQTSS 277


>At3g09920.1 68416.m01183 phosphatidylinositol-4-phosphate 5-kinase
           family protein similar to
           phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
           [Arabidopsis thaliana] GI:3702691; contains Pfam
           profiles PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase, PF02493: MORN repeat
          Length = 815

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 228 PHLREICIGWTQKLRELFHPCQEILLFLG 142
           P   E+  G   K +++ H C +++L+LG
Sbjct: 733 PARAELIPGREDKEKQILHDCCDVVLYLG 761


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,357,708
Number of Sequences: 28952
Number of extensions: 95455
Number of successful extensions: 269
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,070,560
effective HSP length: 58
effective length of database: 10,391,344
effective search space used: 218218224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)